Repositories list

• sparql-examples

  Public
  A set of SPARQL examples that are used in different GerBI resources

  HTML

  •

  Other

  •3636 forks•11 star•00 issues•22 pull requests•Updated Apr 24, 2026Apr 24, 2026

• gide-data-deliverable

  Public
  Combining RO-Crates of IDR, SSBD and BIA

  HTML

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• idr_study_crates

  Public
  Experimenting with RO-Crates for IDR metadata

  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• nfdi-formats

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•22 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• omero-ontop-mappings

  Public
  ONTOP module for querying OMERO with SPARQL

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •44 forks•22 stars•1414 issues•22 pull requests•Updated Apr 7, 2026Apr 7, 2026

• gide-sparnatural

  Public
  Sparnatural on triples from IDR and other bioimagin resources

  CSS

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• ome-zarr-acknowledgments

  Public
  People that have contributed to OME-Zarr at some point

  HTML

  •1010 forks•33 stars•88 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• fit-for-omero_ansible-playbook

  Public
  Ansible playbook examples to install OMERO used during the Fit for OMERO workshop

  Jinja

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• .teams

  Public
  Organizational teams managed via a YAML file

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•11 pull request•Updated Feb 27, 2026Feb 27, 2026

• omero-rdf

  Public
  A plugin for exporting RDF from OMERO

  nfdi4bioimage

  nfdi4bioimage

  Python

  •

  GNU General Public License v2.0

  •1313 forks•1515 stars•2929 issues•77 pull requests•Updated Feb 27, 2026Feb 27, 2026

• nixos-dev-omero

  Public
  NixOs configutation and HowTo for an out of the box setup to contribute to OMERO.web and plugins

  Nix

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• omero-autotag

  Public
  Extensions to OMERO.web to enhance tagging

  omero-web

  omero-web

  JavaScript

  •

  GNU Affero General Public License v3.0

  •44 forks•00 stars•33 issues•11 pull request•Updated Jan 26, 2026Jan 26, 2026

• bioimageaipub

  Public
  BioimageAIpub: a toolbox for AI-ready bioimaging data publishing

  Python

  •

  Apache License 2.0

  •22 forks•33 stars•11 issue•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• incubator

  Public
  A place for issues to grow

  00 forks•22 stars•5454 issues•00 pull requests•Updated Dec 8, 2025Dec 8, 2025

• omero-tagsearch

  Public
  Extensions to OMERO.web to enhance image/dataset/project filtering from tags.

  omero-web

  omero-web

  HTML

  •

  GNU Affero General Public License v3.0

  •33 forks•00 stars•55 issues•22 pull requests•Updated Dec 4, 2025Dec 4, 2025

• omero_macro-extensions

  Public
  Java

  •

  GNU General Public License v2.0

  •55 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• .github

  Public
  00 forks•11 star•00 issues•00 pull requests•Updated Nov 25, 2025Nov 25, 2025

• RDM4mic

  Public
  RDM4mic working group - research data management for microscopy data

  data-managementmicroscopy

  data-managementmicroscopy

  Creative Commons Attribution 4.0 International

  •11 fork•99 stars•11 issue•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• ome-zarr-ideas

  Public
  Ideas for supporting OME / OME-Zarr in the context of GerBI

  ideasome-zarr

  ideasome-zarr

  00 forks•11 star•6767 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• RDM4mic.github.io

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2025Sep 15, 2025

• idr_metadata_model

  Public
  Python

  •

  Apache License 2.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jul 31, 2025Jul 31, 2025

• jupyterhub-deploy-docker

  Public
  Reference deployment of JupyterHub with docker

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •386386 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2025Apr 1, 2025

• fiji_omero_workflows

  Public
  ImageJ/Fiji macros using OMERO

  ImageJ Macro

  •00 forks•33 stars•00 issues•00 pull requests•Updated Mar 28, 2025Mar 28, 2025

• omero_fileserver-import

  Public
  Script to import images from fileserver mounted on an OMERO server

  omeroomero-webomero-import+ 1

  omeroomero-webomero-importomero-scripts

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •22 forks•88 stars•11 issue•00 pull requests•Updated Dec 18, 2024Dec 18, 2024

• omero-scripts

  Public
  Core OMERO Scripts

  Python

  •3131 forks•22 stars•00 issues•00 pull requests•Updated Dec 17, 2024Dec 17, 2024

• omero-rdf-wikidata

  Public
  Wikidata extension for omero-rdf

  Python

  •

  GNU General Public License v2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• ome-owl

  Public
  Mirror of https://gitlab.com/openmicroscopy/incubator/ome-owl

  Java

  •00 forks•11 star•11 issue•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• ome-ld

  Public
  Linked Data support for the OME Model

  nfdi4bioimage

  nfdi4bioimage

  Python

  •33 forks•33 stars•55 issues•22 pull requests•Updated May 25, 2024May 25, 2024

• guide-KVpairs-scripts

  Public
  An OMERO guide to explain how to use the Key-Value pair scripts

  HTML

  •

  BSD 2-Clause "Simplified" License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Mar 20, 2024Mar 20, 2024

• omero-tim2023-playbook

  Public
  Ansible playbook for the TiM2023 OMERO server

  00 forks•00 stars•00 issues•11 pull request•Updated Jul 20, 2023Jul 20, 2023