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    150 repositories

    • packer

      Public
      Repository with scripts to generate Pennsieve AMIs
      packerami
      packerami
      Shell
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 24, 2026Apr 24, 2026

    • app-deploy-service

      Public
      Service for deploying applications
      Go
      •
      Apache License 2.0
      •1•0•0•4•Updated Apr 24, 2026Apr 24, 2026

    • github-client

      Public
      Github Client
      Go
      •0•0•0•2•Updated Apr 24, 2026Apr 24, 2026

    • pennsieve-api

      Public
      Main API for Pennsieve platform
      apiscalaservice
      apiscalaservice
      Scala
      •
      Apache License 2.0
      •1•4•1•6•Updated Apr 24, 2026Apr 24, 2026

    • Nifti-To-Zarr-Conversion

      Public
      converts nifti to ome.zarr
      Python
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • processor_tiff_zarr_converter

      Public
      Pennsieve processor that converts OME-TIFF files to multi-resolution OME-Zarr pyramids optimized for web-based tile viewers.
      Python
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • pennsieve-agent-python

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•1•2•Updated Apr 23, 2026Apr 23, 2026

    • immune-health-portal

      Public
      Immune Health Portal
      Vue
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • migrationtools

      Public
      Python
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • discover-publish

      Public
      The Pennsieve Dataset Publishing Workflow
      Scala
      •
      Apache License 2.0
      •0•0•0•3•Updated Apr 23, 2026Apr 23, 2026

    • processor-bdf-timeseries

      Public
      Process BDF files and import timeseries
      Python
      •2•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • packages-service

      Public
      Pennsieve packages service
      Go
      •
      Apache License 2.0
      •1•0•0•4•Updated Apr 23, 2026Apr 23, 2026

    • pennsieve-app

      Public
      Refactored Pennsieve App leveraging Vue3
      Vue
      •
      Apache License 2.0
      •2•1•0•9•Updated Apr 23, 2026Apr 23, 2026

    • discover-service

      Public
      Pennsieve Discover Service
      Scala
      •
      Apache License 2.0
      •0•1•1•1•Updated Apr 21, 2026Apr 21, 2026

    • pennsieve-agent

      Public
      The Pennsieve platform provides a local application to manage uploads and perform as intermediary between clients and the Pennsieve servers. The pennsieve-agent…
      goagentcli
      goagentcligolangclientgrpcclient-sideclient-library
      Go
      •
      Apache License 2.0
      •2•3•0•3•Updated Apr 21, 2026Apr 21, 2026

    • Pennsieve-Visualization

      Public
      Library for all of Pennsieve visualization tools
      Vue
      •0•0•0•5•Updated Apr 21, 2026Apr 21, 2026

    • upload-service-v2

      Public
      Version 2 of the Pennsieve upload service
      Go
      •
      Apache License 2.0
      •1•0•0•2•Updated Apr 21, 2026Apr 21, 2026

    • account-service

      Public
      Service for persisting and retrieval of App Store registered accounts and account specific utility endpoints
      Go
      •
      Apache License 2.0
      •0•0•0•2•Updated Apr 21, 2026Apr 21, 2026

    • discover-release

      Public
      low-risk
      low-risk
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Apr 20, 2026Apr 20, 2026

    • pennsieve-go-core

      Public
      Shared code for the Go services in Pennsieve
      Go
      •
      Apache License 2.0
      •1•0•0•1•Updated Apr 20, 2026Apr 20, 2026

    • pennsieve-go

      Public
      Go Client for the Pennsieve Platform
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • zipit-service

      Public
      Service enables the ability to download entire packages
      TypeScript
      •
      Apache License 2.0
      •0•0•0•28•Updated Apr 17, 2026Apr 17, 2026

    • zip-processor

      Public
      A processor for zip files.
      etl
      etl
      Python
      •0•0•0•1•Updated Apr 13, 2026Apr 13, 2026

    • dbgap-prep

      Public
      A Pennsieve analysis workflow application to create dbGaP submission files.
      Go
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 10, 2026Apr 10, 2026

    • data-target-assets

      Public
      A Pennsieve data target that imports asset files (e.g. viewer assets) into the platform via the /import API. Runs as an ECS task or AWS Lambda function.
      Go
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • pennsieve-go-api

      Public
      Golang API for the Pennsieve Platform
      Go
      •
      Apache License 2.0
      •0•0•0•3•Updated Apr 10, 2026Apr 10, 2026

    • data-target-pennsieve

      Public
      Data target for Pennsieve analytic workflows. This Pennsieve managed data-target uploads files from an output of a processor to a Pennsieve Dataset
      Go
      •0•0•0•2•Updated Apr 9, 2026Apr 9, 2026

    • discover-s3clean-lambda

      Public
      low-risk
      low-risk
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 8, 2026Apr 8, 2026

    • pennsieve-go-llm

      Public
      Go LLM SDK for processors
      Go
      •0•0•0•2•Updated Apr 8, 2026Apr 8, 2026

    • processor-test-llm-summarizer

      Public
      This is a simple processor that take JSON file from INPUT_DIR and calls BedRock to summarize
      Go
      •0•0•0•2•Updated Apr 8, 2026Apr 8, 2026
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