All

76 repositories

BiodiversityObservationNetworks.jl
Public
Methods for optimizing the spatial location of biodiversity-observation-networks
spatial-analysis biodiversity sampling-methods
spatial-analysis biodiversity sampling-methods conservation-bio geobon
Julia
•
MIT License
•1•3•7•1•Updated Apr 24, 2026Apr 24, 2026
SpeciesDistributionToolkit.jl
Public
Work with species distributions in Julia
ecology biodiversity biogeography
ecology biodiversity biogeography bioclim species-distribution-models chelsa earthenv
Julia
•
Other
•2•26•18•1•Updated Apr 18, 2026Apr 18, 2026
BART.jl
Public
Julia
•
MIT License
•4•0•0•0•Updated Apr 10, 2026Apr 10, 2026
SpatialBoundaries.jl
Public
https://poisotlab.github.io/SpatialBoundaries.jl/
Julia
•
MIT License
•0•2•1•0•Updated Mar 28, 2026Mar 28, 2026
curiosity-score-bon
Public
Julia
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
LandscapeMetrics.jl
Public
Julia
•
MIT License
•1•0•0•0•Updated Jan 26, 2026Jan 26, 2026
RRVReservoirsDistribution
Public
Julia
•0•0•0•0•Updated Nov 5, 2025Nov 5, 2025
SpeciesInteractionNetworks.jl
Public
Work on species interaction networks in Julia
Julia
•
Other
•0•14•2•2•Updated Oct 28, 2025Oct 28, 2025
IUCNRangeMaps
Public
Template code to get IUCN rangemaps using SDT
Julia
•0•0•0•0•Updated Aug 22, 2025Aug 22, 2025
ms_sdt_software
Public
Jupyter Notebook
•1•1•0•0•Updated Jul 21, 2025Jul 21, 2025
CSEE2025_Workshop
Public
Interpretable ML for SDMs Workshop --- CSEE 2025
TeX
•0•0•0•0•Updated Jul 6, 2025Jul 6, 2025
website
Public
Hugo sources for the lab's website
hugo academic-website
hugo academic-website
TeX
•
GNU General Public License v3.0
•8•8•0•0•Updated Jul 4, 2025Jul 4, 2025
ms_ncbitaxonomy_softwarenote
Public
https://poisotlab.github.io/ms_ncbitaxonomy_softwarenote/
Typst
•0•0•2•0•Updated Jul 1, 2025Jul 1, 2025
NCBITaxonomy.jl
Public
Wrapper around the NCBI taxonomy files
taxonomy ncbi-taxonomy biodiversity
taxonomy ncbi-taxonomy biodiversity ncbi biodiversity-data ivado verena
Julia
•
MIT License
•2•8•2•1•Updated Jun 30, 2025Jun 30, 2025
urbanfox
Public
Dashboard and code for understanding the distribution of urban foxes and canine distemper in Berlin :fox_face:
R
•
Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Jun 20, 2025Jun 20, 2025
manuscript-template
Public template
TeX
•10•51•1•0•Updated Dec 6, 2024Dec 6, 2024
manuscript-typesetter
Public
This is the code that builds the manuscripts
Julia
•
MIT License
•1•0•1•0•Updated Dec 6, 2024Dec 6, 2024
Mangal.jl
Public
Get data*. Make science*. (*: only if it's about ecological networks tho)
Julia
•
MIT License
•2•9•2•0•Updated Oct 13, 2024Oct 13, 2024
ms_network_prediction
Public
Making better network predictions through ML - done right!
TeX
•
Other
•2•1•1•1•Updated Sep 3, 2024Sep 3, 2024
SpatialProbabilisticMetaweb
Public
Downscaling metawebs and playing with uncertainty in space. Published in Philosophical Transactions of the Royal Society B at https://doi.org/10.1098/rstb.2023.…
Julia
•
MIT License
•0•2•0•0•Updated Aug 22, 2024Aug 22, 2024
Omnomnomivores
Public
Sadly no omnomnomivores will be featured 😔
Julia
•
MIT License
•0•0•5•1•Updated Jul 5, 2024Jul 5, 2024
ms_womble_ya_net
Public
Check out my gravel pit, A mystery unravel'n
TeX
•0•0•1•0•Updated Apr 4, 2024Apr 4, 2024
ms_metaweb_perspectives
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 19, 2023Sep 19, 2023
ms_betacov_mapping
Public
TeX
•0•1•0•0•Updated Sep 1, 2023Sep 1, 2023
EcologicalNetworks.jl
Public archive
Everything you've never dreamed about measuring on ecological networks.
julia networks ecology
julia networks ecology
Julia
•
Other
•18•69•1•0•Updated Jun 23, 2023Jun 23, 2023
ms_networks_boundaries
Public
Where do networks stop?
TeX
•0•1•0•0•Updated Feb 28, 2023Feb 28, 2023
ms_networkary_classifiers
Public
Guidelines for binary classifiers applied to ecological networks
TeX
•0•0•0•0•Updated Jan 27, 2023Jan 27, 2023
EcologicalNetworksPlots.jl
Public
Networks. Boil 'em mash 'em stick 'em in a stew. And now, plot 'em.
graph-algorithms force-layout ecology
graph-algorithms force-layout ecology force-directed-graphs ecological-network
Julia
•
Other
•0•4•1•2•Updated Dec 12, 2022Dec 12, 2022
Fauxcurrences.jl
Public archive
Generates null models for species occurrence data
biodiversity occurrences species-distribution-models
biodiversity occurrences species-distribution-models
Julia
•
MIT License
•0•3•2•1•Updated Dec 11, 2022Dec 11, 2022
SimpleSDMLayers.jl
Public archive
Simple layers for species distribution modeling and bioclimatic data
raster geotiff climate-change
raster geotiff climate-change bioclim species-distribution-models landcover
Julia
•
MIT License
•1•18•7•2•Updated Dec 11, 2022Dec 11, 2022

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EPIC Biodiversity

All

All

76 repositories

BiodiversityObservationNetworks.jl

SpeciesDistributionToolkit.jl

BART.jl

SpatialBoundaries.jl

curiosity-score-bon

LandscapeMetrics.jl

RRVReservoirsDistribution

SpeciesInteractionNetworks.jl

IUCNRangeMaps

ms_sdt_software

CSEE2025_Workshop

website

ms_ncbitaxonomy_softwarenote

NCBITaxonomy.jl

urbanfox

manuscript-template

manuscript-typesetter

Mangal.jl

ms_network_prediction

SpatialProbabilisticMetaweb

Omnomnomivores

ms_womble_ya_net

ms_metaweb_perspectives

ms_betacov_mapping

EcologicalNetworks.jl

ms_networks_boundaries

ms_networkary_classifiers

EcologicalNetworksPlots.jl

Fauxcurrences.jl

SimpleSDMLayers.jl

All

All

Repositories list

76 repositories