Repositories list

• Menopause_OVX

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• FunctionalXandY

  Public
  Describes methods to use expression of specific genes on the X and Y chromosomes to infer the sex chromosome complement and identifies genes consistently affect…

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 29, 2025Sep 29, 2025

• SCC-alignment

  Public
  repository for code associated with the SCC-aware alignment tutorial paper (Plaisier et al. 202x)

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• VariantCalling

  Public
  Investigating the effects of different parameters on variant calling genome-wide (A, X, Y, mtDNA)

  Python

  •

  GNU General Public License v3.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated Aug 4, 2025Aug 4, 2025

• CCLE_SexChr

  Public
  Identifying sex chromosome complement in cancer cell line encyclopedia (CCLE) samples

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2025Feb 6, 2025

• Placenta_Genomics_Database

  Public
  This repository contains data and code for annotating placenta genomics datasets.

  22 forks•22 stars•00 issues•00 pull requests•Updated Jan 21, 2025Jan 21, 2025

• SexChrCoordinates

  Public
  Coordinates for genomic features on human X and Y chromosomes.

  00 forks•11 star•11 issue•00 pull requests•Updated Dec 29, 2024Dec 29, 2024

• SexInference

  Public
  Infer sex from DNA sequencing data and RNA sequencing data

  R

  •

  GNU General Public License v3.0

  •11 fork•66 stars•22 issues•00 pull requests•Updated Oct 7, 2024Oct 7, 2024

• Snails

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 16, 2024Sep 16, 2024

• ComparativePlacenta

  Public
  The Unlicense

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 10, 2024Aug 10, 2024

• Viral_HCC_Sex_Diff

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 26, 2024Jul 26, 2024

• CURES

  Public
  Course based research experiences

  Shell

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 20, 2024Jul 20, 2024

• MOSAIC_GBM_Imaging_Omics

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 3, 2024Jun 3, 2024

• Genomics_CURE

  Public
  Shell

  •

  GNU General Public License v3.0

  •22 forks•11 star•00 issues•11 pull request•Updated Apr 12, 2024Apr 12, 2024

• CancerSexCheck

  Public
  Identifying sex chromosome complement in cancers.

  R

  •

  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2024Feb 14, 2024

• Cancer_Genomics

  Public
  Assembling pipelines for our cancer genomics work. This includes neoepitope identification, and sex difference analyses.

  Python

  •

  GNU General Public License v3.0

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jul 10, 2023Jul 10, 2023

• RodentAddiction

  Public
  HTML

  •

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 22, 2023May 22, 2023

• Vannan-Dissertation-Supplements

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 3, 2022May 3, 2022

• Placenta_Sex_Diff

  Public
  Sex differences in full term uncomplicated human placentas

  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 25, 2022Apr 25, 2022

• BioinformaticsIntroduction

  Public
  Tutorials to get started in bioinformatics

  GNU General Public License v3.0

  •77 forks•5252 stars•00 issues•00 pull requests•Updated Apr 19, 2022Apr 19, 2022

• Placenta_XCI

  Public
  Understanding patterns of X chromosome inactivation in full term human placenta

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2022Apr 8, 2022

• T2T_ChromosomeY

  Public
  Code for the analyses included in the T2T chromosome Y paper

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 22, 2022Mar 22, 2022

• XY_RNAseq

  Public
  R

  •

  GNU General Public License v3.0

  •55 forks•88 stars•00 issues•00 pull requests•Updated Jan 8, 2022Jan 8, 2022

• Cancer_CURE

  Public
  Cancer genomics course-based undergraduate research

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 28, 2021Dec 28, 2021

• Kenya_Fst

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 3, 2021Oct 3, 2021

• TE_expression

  Public
  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2021Jun 9, 2021

• CurrentLabPractices

  Public
  This is where we will update our current genomics and statistical approaches.

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2021May 17, 2021

• Nasonia

  Public
  Parent and species of origin ASE

  R

  •

  GNU Lesser General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 3, 2021May 3, 2021

• Mayo_breast_regional_heterogeneity

  Public
  Multiregional sampling analysis

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2021Apr 6, 2021

• Introgression_Cancer

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 2, 2021Apr 2, 2021