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    56 repositories

    • Telos-test

      Public
      Python
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • pumpkinhash

      Public
      C++
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • amaranth-test

      Public
      Python
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • scallop2

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •7•12•4•0•Updated Mar 21, 2026Mar 21, 2026

    • circMeta

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • CircPlex-test

      Public
      C++
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • CircPlex

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • MELO-ED

      Public
      Python
      •0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

    • amaranth

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Feb 7, 2026Feb 7, 2026

    • TENNIS

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jan 25, 2026Jan 25, 2026

    • catfish-LP

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • TERRACE

      Public
      An assembler for circular RNAs
      rna-seqassemblycircrna
      rna-seqassemblycircrnaback-splicing-junction
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Jan 21, 2026Jan 21, 2026

    • gat-lstm-assembly

      Public
      Python
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • TENNIS-test

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • SubseqSketch

      Public
      C++
      •1•7•0•0•Updated Nov 25, 2025Nov 25, 2025

    • Telos

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Nov 11, 2025Nov 11, 2025

    • dcj-sat

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Sep 18, 2025Sep 18, 2025

    • anchorage

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • subseqhash3

      Public
      C++
      •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • rnaseqtools

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 18, 2025May 18, 2025

    • SubseqHash2

      Public
      Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences
      simdlocality-sensitiveminimized-subsequence
      simdlocality-sensitiveminimized-subsequence
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•0•0•Updated Apr 22, 2025Apr 22, 2025

    • aletsch

      Public
      Assembler for multiple RNA-seq samples
      rna-seqsingle-celltranscriptome-assembly
      rna-seqsingle-celltranscriptome-assemblymeta-assembly
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•2•0•Updated Apr 4, 2025Apr 4, 2025

    • reinforce-assembly

      Public
      Python
      •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • llmembedding

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • SubseqSketch-test

      Public
      Python
      •0•0•0•0•Updated Jan 25, 2025Jan 25, 2025

    • altai

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 16, 2025Jan 16, 2025

    • EquiRep

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Dec 10, 2024Dec 10, 2024

    • EquiRep-test

      Public
      C++
      •1•1•0•0•Updated Nov 10, 2024Nov 10, 2024

    • lecture-notes-for-algorithms

      Public
      TeX
      •2•37•0•0•Updated Nov 6, 2024Nov 6, 2024

    • anchorage-test

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
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