All

24 repositories

vole-app
Public
OME-Zarr volume explorer
image-processing image-data ome-zarr
image-processing image-data ome-zarr
TypeScript
•
Other
•6•0•0•0•Updated Apr 22, 2026Apr 22, 2026
stagetool-ui
Public
Vue3 web interface for StageTool
stagetool
stagetool
Vue
•0•0•3•0•Updated Mar 10, 2026Mar 10, 2026
stem-xylem-traits-in-poplar-genotypes
Public
Code repository for image processing used in the published article
python nextflow image-processing
python nextflow image-processing vessels cavitation stem-anatomy water-conductivity
Python
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Mar 6, 2026Mar 6, 2026
cvat
Public
Annotate better with CVAT, the industry-leading data engine for machine learning. Used and trusted by teams at any scale, for data of any scale.
Python
•
MIT License
•3.7k•0•0•0•Updated Mar 2, 2026Mar 2, 2026
signaling-downstream-of-tumor-stroma-interaction-regulates-mcc-apicobasal-polarity
Public
Image processing source code for the paper "Signaling downstream of tumor-stroma interaction regulates mucinous colorectal carcinoma apicobasal polarity"
Python
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Nov 17, 2025Nov 17, 2025
bioio-bioformats
Public
A BioIO reader plugin for reading bioformats formatted images.
Python
•
GNU General Public License v3.0
•5•0•0•0•Updated Sep 1, 2025Sep 1, 2025
2025-spectral-analysis-of-maritime-communication-systems-andrei-morariu
Public
Spectral analysis of maritime communication systems of vessel engine and control room, implemented in Python and Nextflow
interconnects human-interface control-room
interconnects human-interface control-room wireless-technology digital-equipment electromagnetic-spectrum maritime-communication onboard-equipment sensor-computing resource-interfaces
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jul 7, 2025Jul 7, 2025
2024-silke-zoospore-tracking
Public
Python
•0•0•0•0•Updated May 26, 2025May 26, 2025
.github
Public
0•0•0•0•Updated Mar 10, 2025Mar 10, 2025
ColonyArea
Public
ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.
imagej fiji image-processing
imagej fiji image-processing fiji-plugin cell-biology imagej-plugin
ImageJ Macro
•
GNU General Public License v3.0
•1•2•2•0•Updated Jun 28, 2024Jun 28, 2024
mouse-brain-alignment-tool
Public
Python
•0•0•3•0•Updated Mar 5, 2024Mar 5, 2024
omero-workshop
Public
0•0•0•0•Updated May 23, 2023May 23, 2023
Fast4DReg
Public
Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
Java
•
MIT License
•5•0•0•0•Updated May 22, 2023May 22, 2023
split-and-merge
Public
Fiji macro that splits and merges multi-dimensional TIFFs.
fiji image-processing bioimage-analysis
fiji image-processing bioimage-analysis fiji-macro
ImageJ Macro
•
MIT License
•0•0•0•0•Updated Jan 30, 2023Jan 30, 2023
imagej.github.io
Public
The ImageJ wiki
JavaScript
•
Other
•181•0•0•0•Updated Jan 15, 2023Jan 15, 2023
list-of-update-sites
Public
The update sites ImageJ2 knows about automatically
Python
•106•0•0•0•Updated Jan 4, 2023Jan 4, 2023
filopodia-counter
Public
Fiji script for automated filopodia counting from single cell images.
fiji biology image-processing
fiji biology image-processing imagej-macro fiji-macro
ImageJ Macro
•
MIT License
•0•1•0•0•Updated Jan 3, 2023Jan 3, 2023
idt-colocalization-analysis
Public
Container for performing classic image colocalization analysis
container
container
Python
•0•0•1•0•Updated Dec 5, 2022Dec 5, 2022
idt-texture-analysis
Public
python docker container
python docker container image-analysis haralick-features mahotas
Python
•0•0•1•0•Updated Dec 5, 2022Dec 5, 2022
splinedist-starter
Public archive
Starter package for using SplineDist for cell segmentation
python teaching segmentation
python teaching segmentation microscopy splinedist
C
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Jun 17, 2022Jun 17, 2022
splinedist
Public
SplineDist: Automated Cell Segmentation with Spline Curves
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•14•0•0•0•Updated May 25, 2022May 25, 2022
omero-docker
Public
Deploy an OMERO server using Docker Compose
docker omero microscopy
docker omero microscopy bioimaging
Shell
•0•0•0•0•Updated May 23, 2022May 23, 2022
omero-cli-docker
Public
PowerShell
•
MIT License
•0•0•0•0•Updated May 19, 2022May 19, 2022
turku-bioimaging.github.io
Public
Website of Turku Bioimaging - Image Data Team (TBI-IDAT) containing our current and past projects as well as software and tools we use.
python docker fiji
python docker fiji keras image-processing cellprofiler image-segmentation bash-script
HTML
•0•0•2•0•Updated Feb 1, 2022Feb 1, 2022

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Turku BioImaging

All

All

24 repositories

vole-app

stagetool-ui

stem-xylem-traits-in-poplar-genotypes

cvat

signaling-downstream-of-tumor-stroma-interaction-regulates-mcc-apicobasal-polarity

bioio-bioformats

2025-spectral-analysis-of-maritime-communication-systems-andrei-morariu

2024-silke-zoospore-tracking

.github

ColonyArea

mouse-brain-alignment-tool

omero-workshop

Fast4DReg

split-and-merge

imagej.github.io

list-of-update-sites

filopodia-counter

idt-colocalization-analysis

idt-texture-analysis

splinedist-starter

splinedist

omero-docker

omero-cli-docker

turku-bioimaging.github.io

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All

Repositories list

24 repositories