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    55 repositories

    • MedBook-Documentation

      Public
      Documents explaining MedBook
      0•0•0•0•Updated Dec 12, 2017Dec 12, 2017

    • MedBook_

      Public
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•9•6•Updated May 22, 2017May 22, 2017

    • data-wrangling-scripts

      Public
      Scripts used manually to prepare data for import to and export from MedBook
      Python
      •0•2•0•0•Updated Apr 20, 2017Apr 20, 2017

    • treeshop

      Public
      Distributed task tools to run small batches outside the core
      Makefile
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 10, 2017Mar 10, 2017

    • case-book

      Public
      Tumor Board Insight app
      JavaScript
      •1•0•0•0•Updated Jan 5, 2017Jan 5, 2017

    • medbook-xena-importer

      Public
      A grab bag of scripts for bringing MedBook data into Xena
      Shell
      •0•0•0•0•Updated Dec 8, 2016Dec 8, 2016

    • dockerspawner

      Public
      Spawns JupyterHub user servers in Docker containers
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •306•0•0•0•Updated Oct 26, 2016Oct 26, 2016

    • MedBook

      Public
      Parent repo, all MedBook components included as submodules
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•2•0•Updated Oct 13, 2016Oct 13, 2016

    • patient-care

      Public
      Clincian facing portal showing pathways, signatures, and genes of interest
      JavaScript
      •1•2•34•0•Updated Oct 13, 2016Oct 13, 2016

    • meteor-docker-image

      Public
      Shell
      •0•0•0•0•Updated Oct 11, 2016Oct 11, 2016

    • MedBook-JobRunner

      Public
      Runs and monitors Jobs (Current UNIX processes, Galaxy and other Environments coming)
      JavaScript
      •1•2•5•1•Updated Oct 10, 2016Oct 10, 2016

    • external-tools

      Public
      allows external tools to run on MedBook data.
      Python
      •1•0•1•1•Updated Oct 10, 2016Oct 10, 2016

    • MedBook-Wrangler

      Public
      JavaScript
      •1•1•11•0•Updated Oct 5, 2016Oct 5, 2016

    • medbook-dgidb

      Public
      Scripts to extract gene to drug interactions from DGIdb into a gmt file
      Makefile
      •0•0•0•0•Updated Oct 4, 2016Oct 4, 2016

    • primary-collections

      Public
      The repository for medbook:primary-collections
      JavaScript
      •1•0•0•1•Updated Sep 12, 2016Sep 12, 2016

    • collaborations

      Public
      Collaboration based security architecture (similar to Roles and Friends)
      JavaScript
      •4•0•2•0•Updated Sep 12, 2016Sep 12, 2016

    • blobs

      Public
      JavaScript
      •0•0•3•0•Updated Sep 12, 2016Sep 12, 2016

    • wrangler-collections

      Public
      JavaScript
      •1•0•0•0•Updated Aug 17, 2016Aug 17, 2016

    • cbioportal-docker

      Public
      cBioPortal | Dockerized Automated Build Implementation
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 16, 2016Aug 16, 2016

    • fusion

      Public
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 30, 2016Jul 30, 2016

    • RPad

      Public
      JavaScript
      •0•0•0•0•Updated Jul 29, 2016Jul 29, 2016

    • MedBook-Gateway

      Public
      JavaScript
      •1•0•0•0•Updated Jul 27, 2016Jul 27, 2016

    • referential-integrity

      Public
      All code that maintains referential integrity between collections
      JavaScript
      •0•0•0•0•Updated Jul 18, 2016Jul 18, 2016

    • MedBook-Fusion5

      Public
      JavaScript
      •0•0•1•0•Updated Jul 8, 2016Jul 8, 2016

    • cbioportal

      Public
      JavaScript
      •
      GNU Affero General Public License v3.0
      •850•0•0•0•Updated Jun 22, 2016Jun 22, 2016

    • data-sets-forms-proof

      Public
      JavaScript
      •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

    • MedBook-CRFs

      Public
      JavaScript
      •1•1•7•5•Updated Jun 20, 2016Jun 20, 2016

    • MedBook-Telescope3

      Public
      JavaScript
      •0•0•20•0•Updated Jun 15, 2016Jun 15, 2016

    • MedBook-ObservationDeck

      Public
      JavaScript
      •0•0•0•0•Updated Jun 9, 2016Jun 9, 2016

    • MedBook-Packages

      Public
      MedBook Packages that are shared between MedBook Apps
      JavaScript
      •0•1•0•0•Updated Jun 9, 2016Jun 9, 2016
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