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    159 repositories

    • DIMSdb

      Public
      database for Direct Infusion Mass Spectrometry pipeline
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • CustomModules

      Public
      R
      •
      MIT License
      •0•3•0•1•Updated Apr 24, 2026Apr 24, 2026

    • clarity_epp

      Public
      Clarity LIMS epp scripts
      Python
      •
      MIT License
      •0•1•0•2•Updated Apr 24, 2026Apr 24, 2026

    • Modules

      Public
      Test repo to host nf-core style modules
      0•0•0•1•Updated Apr 22, 2026Apr 22, 2026

    • nf-core-tools

      Public
      Python package with helper tools for the nf-core community.
      Python
      •
      MIT License
      •239•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • GIABEval

      Public
      Genome-in-a-bottle evaluation tool to determine statistics
      Nextflow
      •
      MIT License
      •0•2•0•2•Updated Apr 22, 2026Apr 22, 2026

    • DIMS

      Public
      Direct Infusion Mass Spectrometry pipeline
      Nextflow
      •
      MIT License
      •2•2•11•4•Updated Apr 21, 2026Apr 21, 2026

    • AdvancedBioinformaticsCourse

      Public
      Creative Commons Zero v1.0 Universal
      •0•4•0•0•Updated Apr 19, 2026Apr 19, 2026

    • ood_rstudio

      Public
      App to start Rstudio server on HPC node via OpenOndemand
      HTML
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 15, 2026Apr 15, 2026

    • Dx_resources

      Public
      Resources used in diagnostics pipelines
      Python
      •
      MIT License
      •0•3•15•2•Updated Apr 13, 2026Apr 13, 2026

    • tucan

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Mar 30, 2026Mar 30, 2026

    • alissa_interpret_client

      Public archive
      Alissa Interpret Public API Client
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • USEQ_tools

      Public
      Utility scripts to work with Genologics Clarity LIMS
      Python
      •
      MIT License
      •0•2•0•2•Updated Mar 24, 2026Mar 24, 2026

    • DxNextflowRNA

      Public
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Mar 10, 2026Mar 10, 2026

    • clarity_portal

      Public
      Clarity LIMS portal app
      Python
      •
      MIT License
      •0•0•1•2•Updated Feb 20, 2026Feb 20, 2026

    • pgsc_calc

      Public
      Frozen version of - The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
      Nextflow
      •
      Apache License 2.0
      •45•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • DxNextflowPG

      Public
      Repo with scripts to process pharmacogenetic data.
      Nextflow
      •
      MIT License
      •0•0•1•0•Updated Feb 11, 2026Feb 11, 2026

    • DxNextflowTestData

      Public
      Public Repository to host test data
      Shell
      •0•0•0•0•Updated Feb 9, 2026Feb 9, 2026

    • HammingDistanceCalculator

      Public
      Calculates the hamming distance of sequences
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • sturgeon

      Public
      Sturgeon is a CNS neural network classifier
      nanoporetumorclassification
      nanoporetumorclassificationcns
      Python
      •
      Other
      •10•46•2•0•Updated Jan 22, 2026Jan 22, 2026

    • DxNextflowWES

      Public
      Genome Diagnostics Nextflow WES workflow
      Nextflow
      •
      MIT License
      •1•7•6•0•Updated Jan 16, 2026Jan 16, 2026

    • TSO500_CNV_Tool

      Public
      TSO500 tool to visualise copy number and allele-fraction information
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • Epi2Me_wf-human-variation

      Public
      Nextflow
      •
      Other
      •79•0•0•1•Updated Dec 19, 2025Dec 19, 2025

    • franklin_client

      Public
      Python package for Franklin API
      MIT License
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • clarity_epp2

      Public
      Clarity LIMS epp scripts v2
      Python
      •
      MIT License
      •0•0•0•1•Updated Oct 24, 2025Oct 24, 2025

    • DIMSpect_GUI

      Public
      0•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • hpcguix-web

      Public archive
      The code that drives https://hpc.guix.info/browse.
      JavaScript
      •
      GNU Affero General Public License v3.0
      •3•12•3•0•Updated Sep 14, 2025Sep 14, 2025

    • MUC1_reassembly

      Public
      Small nextflow pipeline to reassembly the MUC1 to identify the VNTR
      Nextflow
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • rsync_to_rdisc

      Public
      Daemon to rsync data from HPC to bgarray
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • aptaflow_useq

      Public
      Modified apaflow pipeline for useq output and umcu hpc
      Nextflow
      •3•0•0•0•Updated Aug 4, 2025Aug 4, 2025
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