Repositories list

• bakrep-web

  Public
  The user interface for bakrep

  HTML

  •00 forks•55 stars•55 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• bakta-web-ui

  Public
  UI for Bakta web app

  TypeScript

  •

  GNU General Public License v3.0

  •11 fork•33 stars•44 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• bakta-web-backend

  Public
  Backend to schedule bakta jobs on a Kubernetes cluster

  Rust

  •

  GNU General Public License v3.0

  •00 forks•22 stars•22 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• bakta

  Public
  Rapid & standardized annotation of bacterial genomes & plasmids

  Python

  •

  GNU General Public License v3.0

  •7777 forks•11 star•00 issues•00 pull requests•Updated Feb 12, 2026Feb 12, 2026

• ReadXplorer

  Public
  ReadXplorer - Visualization and Analysis of Mapped Sequences

  visualizationrna-seqtranscriptomics+ 1

  visualizationrna-seqtranscriptomicsgenome-alignment

  Java

  •

  GNU General Public License v3.0

  •00 forks•33 stars•66 issues•11 pull request•Updated Jul 12, 2025Jul 12, 2025

• bakrep-cli

  Public
  BakRep-CLI: a commandline tool for the batch download of BakRep datasets

  Python

  •

  GNU General Public License v3.0

  •00 forks•1010 stars•22 issues•00 pull requests•Updated Jun 11, 2025Jun 11, 2025

• bakta-docs

  Public
  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 4, 2025Apr 4, 2025

• sorfdb

  Public
  Workflows for the sORFdb database

  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Mar 14, 2025Mar 14, 2025

• bakrep

  Public
  Python

  •

  GNU General Public License v3.0

  •22 forks•77 stars•11 issue•00 pull requests•Updated Feb 17, 2025Feb 17, 2025

• gitops-demo

  Public
  de.NBI cloud usermeeting GitOps demonstrations

  22 forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2024Dec 2, 2024

• kubernetes-course

  Public
  Official documentation and hands-on examples for the kubernetes training course

  MIT License

  •55 forks•44 stars•00 issues•00 pull requests•Updated Nov 28, 2023Nov 28, 2023

• asap

  Public
  A scalable bacterial genome assembly, annotation and analysis pipeline

  Groovy

  •

  GNU General Public License v3.0

  •1919 forks•22 stars•00 issues•00 pull requests•Updated Sep 21, 2023Sep 21, 2023

• wasp

  Public
  Web-Accessible Single Cell RNA-Seq Processing Platform

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 11, 2022Feb 11, 2022

• referenceseeker

  Public
  Rapid determination of appropriate reference genomes.

  Python

  •

  GNU General Public License v3.0

  •77 forks•00 stars•00 issues•00 pull requests•Updated Sep 7, 2021Sep 7, 2021

• platon

  Public
  Identification and characterization of bacterial plasmid contigs from short-read draft assemblies.

  Python

  •

  GNU General Public License v3.0

  •1515 forks•00 stars•00 issues•00 pull requests•Updated Sep 7, 2021Sep 7, 2021

• bakta-web-cleaner

  Public
  Implements a reoccuring job that deals with straggler jobs and expired jobs

  Go

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2021Jun 9, 2021

• LegionellaProject

  Public
  Go

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 23, 2020Dec 23, 2020

• dib-builder

  Public
  Build script for cloud images based on diskimage-builder

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 2, 2020Nov 2, 2020

• BioDataDBModels

  Public
  Go

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 7, 2020Oct 7, 2020

• BioDataDBCLI

  Public
  Go

  •

  Apache License 2.0

  •11 fork•00 stars•33 issues•00 pull requests•Updated Oct 5, 2020Oct 5, 2020

• BioProtobufParser

  Public
  Fasta and gbff to protobuf converter.

  Go

  •

  Apache License 2.0

  •11 fork•00 stars•11 issue•00 pull requests•Updated Sep 23, 2020Sep 23, 2020

• BioProtobufSchemas

  Public
  Protobuf Schemas to describe gbff and fasta files.

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 9, 2020Jul 9, 2020

• nf-hello

  Public
  Classic hello world script in Nextflow language

  Nextflow

  •

  GNU General Public License v3.0

  •124124 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2020May 14, 2020

• greenlight-logo

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2020Apr 24, 2020

• mattermost-plugin-bigbluebutton

  Public
  BigBlueButton plugin for Mattermost :electric_plug:

  JavaScript

  •

  Apache License 2.0

  •4444 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2020Apr 23, 2020

• ecf_classify

  Public
  Command-line tool for classifying proteins into ECFs

  Ruby

  •

  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2020Mar 2, 2020

• image.bioinfo-desktop

  Public
  Cloud image recipe providing a desktop and bioinformatic tools

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 5, 2018Apr 5, 2018