Repositories list

• BugBuilder_II

  Public
  Automated workflow for bacterial assembly and annotation

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• PT_bacterial_assembly_interogation

  Public
  PT_bacterial_assembly_interogation

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• MG_COVIDProt_neutrophils

  Public
  Large-scale proteomics of COVID neutrophils (Chalmers)

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• fenr

  Public
  Fast functional enrichment.

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• MG_Cdk46

  Public
  Mechanisms of action of small molecule inhibitors against cyclin dependent kinases 4 and 6 (CDK4/6) (Ly)

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2026Mar 20, 2026

• PT_fertility_genomics

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• PIPs

  Public
  PIPs webapp migration and containerization

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• MG_PhosphoMEK2

  Public
  Re-analysis of phosphorylation data, including total proteome (Storey)

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• dexdash

  Public
  Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

  R

  •

  Other

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• PT_kraken2_16s_classification

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 16, 2026Feb 16, 2026

• PT_qiime_runner_v1

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• slivka-bio-docker

  Public
  Docker Compose configuration for slivka-bio

  Dockerfile

  •

  Apache License 2.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Jan 28, 2026Jan 28, 2026

• JCA_NSW_comQXPA_rapP

  Public
  comQXPA and rapP genomic analysis

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 14, 2026Jan 14, 2026

• DRSASP-Kinomer

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• DRSASP_kinomer

  Public
  HTML

  •00 forks•00 stars•55 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• ProteoFAV

  Public
  Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

  pythonbioinformaticsstructural-biology+ 9

  pythonbioinformaticsstructural-biologypdbannotationspandasvariantsdata-analysisfeaturesmmcif+ 2

  Python

  •

  MIT License

  •00 forks•44 stars•1313 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• slivka-python-client

  Public
  Python

  •

  Apache License 2.0

  •00 forks•33 stars•33 issues•00 pull requests•Updated Nov 7, 2025Nov 7, 2025

• MG_BSubComp

  Public
  Transcriptomic changes in ΔcomA and ΔrapA mutants in Bacillus subtilis (Stanley-Wall)

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 27, 2025Oct 27, 2025

• Colabfold_batch_installer

  Public
  Automated colabfold installation for UoD HPC Cluster

  Shell

  •00 forks•11 star•11 issue•00 pull requests•Updated Oct 7, 2025Oct 7, 2025

• SACK1G-analysis

  Public
  This is a GitHub Repository containing the data and code used for an structural analysis of FAM83G and FAM83G-CK1A 3D models

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 25, 2025Sep 25, 2025

• AlmostSignificant

  Public
  A server for maintaining high-throughput sequencing QC data

  Python

  •

  MIT License

  •00 forks•1313 stars•00 issues•00 pull requests•Updated Aug 5, 2025Aug 5, 2025

• slivka-bio-installer

  Public
  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 19, 2025Jul 19, 2025

• LIGYSIS-web

  Public
  Roff

  •

  MIT License

  •11 fork•99 stars•00 issues•11 pull request•Updated Jun 24, 2025Jun 24, 2025

• slivka-bio

  Public
  Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalview

  Python

  •

  Apache License 2.0

  •11 fork•44 stars•99 issues•00 pull requests•Updated Apr 29, 2025Apr 29, 2025

• LIGYSIS-custom

  Public
  Roff

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 29, 2025Apr 29, 2025

• slivka

  Public
  Python

  •

  Apache License 2.0

  •44 forks•99 stars•2525 issues•00 pull requests•Updated Mar 31, 2025Mar 31, 2025

• MG_NICDhalf

  Public
  NICD half life from Western blots (Meijer)

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2025Mar 31, 2025

• m6a_arabidopsis_autoimmunity

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2025Feb 17, 2025

• MG_Methyl28S

  Public
  28S methylation in disease in Drosophila (McGurk)

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2025Jan 28, 2025

• RNAit

  Public
  Reimplementation of RNAit RNAi primer selection tool

  HTML

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025