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    • One liner tool to check the quality of your single-cell atlases.
      HTML
      BSD 3-Clause "New" or "Revised" License
      23160Updated Apr 7, 2026Apr 7, 2026
    • Jupyter Notebook
      GNU General Public License v3.0
      1000Updated Mar 25, 2026Mar 25, 2026
    • bacnet

      Public
      BACNET is a Java based platform to develop website for multi-omics analysis
      Java
      GNU General Public License v3.0
      113240Updated Feb 16, 2026Feb 16, 2026
    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      JavaScript
      GNU General Public License v3.0
      658000Updated Jan 9, 2026Jan 9, 2026
    • test-data

      Public
      Test data for MultiQC.
      HTML
      MIT License
      157000Updated Dec 10, 2025Dec 10, 2025
    • One liner tool to check the quality of your single-cell atlases.
      Nextflow
      MIT License
      0000Updated Jul 7, 2025Jul 7, 2025
    • Nextflow for rnaseq workflow
      Jupyter Notebook
      0000Updated Sep 27, 2024Sep 27, 2024
    • nf-blast

      Public
      Nextflow - Blast workflow
      Nextflow
      MIT License
      0000Updated Nov 20, 2023Nov 20, 2023
    • Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      MIT License
      157000Updated Jul 21, 2023Jul 21, 2023
    • Website for screening marker genes to lung cell type hierarchical graph
      Python
      Apache License 2.0
      1000Updated Jun 12, 2023Jun 12, 2023
    • BioRegul

      Public
      Apache License 2.0
      0000Updated Jun 6, 2023Jun 6, 2023
    • A small python script to import cellranger analysis into Scapy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE red…
      Python
      MIT License
      0100Updated Jul 27, 2022Jul 27, 2022
    • An example eclipse RAP e4 project which can be export to .war file
      Java
      MIT License
      1000Updated Dec 20, 2021Dec 20, 2021
    • A small R script to import cellranger analysis into Seurat. It includes the count matrices, the UMAP+T-SNE reduction, and the clustering
      R
      MIT License
      0000Updated Jun 17, 2021Jun 17, 2021
    • Sample dataset used for starting up BACNET demo
      Shell
      GNU General Public License v3.0
      0100Updated May 18, 2020May 18, 2020
    • An atlas of the healthy airway epithelium -
      HTML
      2000Updated Feb 13, 2020Feb 13, 2020
    • Benchmarking computational single cell ATAC-seq methods
      Jupyter Notebook
      MIT License
      39000Updated Dec 5, 2019Dec 5, 2019
    • RIP-Seq and RNA-Seq of an RNA-binding protein secreted by Listeria monocytogenes which activates RIG-I signaling Secreted bacterial
      R
      GNU General Public License v3.0
      2100Updated Nov 28, 2019Nov 28, 2019
    • seurat

      Public
      R toolkit for single cell genomics
      R
      GNU General Public License v3.0
      985000Updated Oct 9, 2019Oct 9, 2019
    • signac

      Public
      R toolkit for the analysis of single-cell chromatin data
      R
      Other
      103000Updated Aug 30, 2019Aug 30, 2019
    • biojava

      Public
      :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
      Java
      GNU Lesser General Public License v2.1
      395000Updated Jun 23, 2019Jun 23, 2019
    • MeRIPSeq

      Public
      MeRIP-Seq pipeline analysis for m6a methylation site detection
      Python
      GNU General Public License v3.0
      0700Updated Jun 12, 2019Jun 12, 2019
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