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    • Group website
      TeX
      6203Updated Apr 26, 2026Apr 26, 2026
    • Analysis of phenobooth data from a library screen
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      0003Updated Oct 18, 2023Oct 18, 2023
    • DNA_Tools

      Public
      Primer Design Tool
      Python
      1101Updated Dec 13, 2022Dec 13, 2022
    • Some sabio parsing stuff.
      Jupyter Notebook
      0000Updated Jul 13, 2022Jul 13, 2022
    • better-cb

      Public
      A compendium of tools for (better) computational biology.
      HTML
      Other
      3420Updated Apr 21, 2022Apr 21, 2022
    • iMN22HE

      Public
      Methanoperedens nitroreducens genome-scale metabolic model.
      Jupyter Notebook
      Creative Commons Attribution 4.0 International
      0100Updated Feb 8, 2022Feb 8, 2022
    • Analysis of omics data for Debaryomyces hansenii
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      0000Updated Nov 18, 2021Nov 18, 2021
    • thesis

      Public
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      1000Updated Jan 20, 2021Jan 20, 2021
    • pyphe

      Public
      Python toolbox for phenotype analysis of arrayed microbial colonies
      Python
      MIT License
      3000Updated Dec 15, 2020Dec 15, 2020
    • HTML
      GNU General Public License v3.0
      0000Updated Dec 2, 2020Dec 2, 2020
    • swiglpk

      Public
      Simple swig bindings for the GNU Linear Programming Kit
      Python
      GNU General Public License v3.0
      10000Updated Jan 9, 2020Jan 9, 2020
    • cameo

      Public
      cameo - computer aided metabolic engineering & optimization
      Python
      Apache License 2.0
      45000Updated Dec 10, 2019Dec 10, 2019
    • Test metabolic models in the wild and rank them according to popularity and how easily they can be improved.
      HTML
      Apache License 2.0
      2000Updated Dec 10, 2019Dec 10, 2019
    • https://biosustain.github.io/cell-factory-design-course/
      Jupyter Notebook
      7000Updated Aug 27, 2019Aug 27, 2019
    • Python
      Apache License 2.0
      3000Updated Jul 9, 2019Jul 9, 2019
    • 3000Updated Apr 11, 2019Apr 11, 2019
    • Model predictive control (MPC) for fermentations
      Jupyter Notebook
      3000Updated Feb 28, 2019Feb 28, 2019
    • marsi

      Public
      Metabolite Analogues for Strain Improvement
      Python
      Apache License 2.0
      2000Updated Jan 7, 2019Jan 7, 2019
    • ec_iYO844

      Public
      Enzyme constrained B. subtilis model (based on iYO844)
      MATLAB
      2000Updated Dec 15, 2018Dec 15, 2018
    • gnomic

      Public
      A grammar for describing microbial genotypes and phenotypes
      Python
      Other
      2000Updated Sep 4, 2017Sep 4, 2017
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