Repositories list

• veith_et_al_2026

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 1, 2026Mar 1, 2026

• napari-pyav

  Public
  Video reader plugin and video (+sound) player widget for Napari

  video-playervideo-readerpyav+ 2

  video-playervideo-readerpyavnapari-pluginnapari

  Python

  •

  MIT License

  •11 fork•44 stars•00 issues•00 pull requests•Updated Jan 29, 2026Jan 29, 2026

• dejaq

  Public
  DejaQueue – a fast alternative to multiprocessing.Queue

  multiprocessingparallelshared-memory+ 2

  multiprocessingparallelshared-memoryqueuesnumpy-arrays

  Python

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Jan 26, 2026Jan 26, 2026

• warpfield

  Public
  GPU-based 3D non-rigid volumetric registration

  gpucuda3d-registration+ 4

  gpucuda3d-registration3d-imagesnon-rigid-registrationimage-transformationvolume-registration

  Python

  •

  MIT License

  •44 forks•4747 stars•22 issues•11 pull request•Updated Aug 26, 2025Aug 26, 2025

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.9k5.9k forks•00 stars•00 issues•00 pull requests•Updated May 8, 2025May 8, 2025

• opm_unshear

  Public
  GPU-accelerated oblique interpolation for volume unshearing / deskewing in oblique plane microscopy (OPM)

  cudamicroscopycupy+ 2

  cudamicroscopycupyoblique-plane-microscopyoblique-interpolation

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 8, 2025May 8, 2025

• daio

  Public
  video and data IO tools for Python

  data-sciencehdf5h5py+ 4

  data-sciencehdf5h5pypyavvideo-iofast-seekframe-accurate

  Python

  •

  MIT License

  •00 forks•66 stars•00 issues•00 pull requests•Updated May 1, 2025May 1, 2025

• lsmaq

  Public
  Laser scanning microscope acquisition software

  MATLAB

  •

  MIT License

  •55 forks•1818 stars•11 issue•00 pull requests•Updated Feb 27, 2025Feb 27, 2025

• Bohm_et_al_2024

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 28, 2024Oct 28, 2024

• Berlage_et_al_2024

  Public
  Code for three-dimensional random access scanning at up to 340 kHz

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2024Sep 10, 2024

• slurm_jupyter_kernel

  Public
  Manage (create, list, modify and delete) and starting jupyter kernels using sbatch

  Python

  •

  MIT License

  •55 forks•00 stars•00 issues•00 pull requests•Updated Sep 6, 2024Sep 6, 2024

• groneberg_et_al_2024

  Public
  code related to Groneberg et al.

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 10, 2024Jul 10, 2024

• veith_et_al_2024

  Public
  code related to Veith et al.

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 17, 2024Jun 17, 2024

• hoffmann_et_al_2023

  Public
  code related to Hoffmann, M., Henninger, J. et al. Nature Communications 14, 8019 (2023).

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 13, 2023Nov 13, 2023

• PyVCAM

  Public
  Fix for Issue #35 (Python3.X wrapper for Photometrics and QImaging PVCAM based cameras)

  Python

  •

  MIT License

  •2020 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2023Sep 18, 2023

• ccberlin

  Public archive
  homepage

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 6, 2023Jul 6, 2023

• ndview

  Public
  multi-dimensional array viewer for jupyter

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 12, 2023Jan 12, 2023

• saturnXY_mount

  Public
  custom mount for the saturn galvo scanners

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2022Apr 6, 2022

• schulze-henninger2018

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 6, 2018Apr 6, 2018