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    63 repositories

    • fsl-feat

      Public archive
      FEAT is a software tool for high quality model-based FMRI data analysis
      Dockerfile
      •3•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • fsl-anat

      Public archive
      A Flywheel gear for running FSL's Processing Script: fsl_anat
      Python
      •1•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • fsl-fslreorient2std

      Public archive
      Python
      •0•1•0•1•Updated Feb 2, 2026Feb 2, 2026

    • fsl-sienax

      Public archive
      A Flywheel gear for running FSL's SIENAX
      Dockerfile
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • fsl-topup

      Public archive
      Flywheel Gear to execute TopUp from FSL
      Python
      •3•3•0•1•Updated Feb 2, 2026Feb 2, 2026

    • nobrainer-gear

      Public archive
      This gear wraps nobrainer for prediction on 3D imaging
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • ROI_export

      Public archive
      Exports ROIs as csv
      Python
      •0•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • philips_to_ismrmrd

      Public archive
      Philips to ISMRMRD converter
      XSLT
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • siemens_to_ismrmrd

      Public archive
      Siemens to ISMRMRD converter
      Shell
      •0•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • fsl-siena-sienax

      Public archive
      Shell
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • bids-freesurfer

      Public archive
      Gear that runs freesurfer on BIDS-curated data
      Python
      •
      Apache License 2.0
      •1•0•1•0•Updated Feb 2, 2026Feb 2, 2026

    • eeg-classifier

      Public archive
      Classification tool for EEG data
      Python
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • ptd_header_parser

      Public archive
      Parses header information from *.ptd files and saves the outputs as JSON
      Python
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • csv-import

      Public archive
      Parse a CSV and place CSV info into Subject info using the Python SDK
      Python
      •1•0•0•1•Updated Sep 8, 2025Sep 8, 2025

    • mri-deface

      Public archive
      This gear uses the mri_deface tool from Free Surfer to deface an MRI image.
      Shell
      •0•3•1•1•Updated Sep 8, 2025Sep 8, 2025

    • pydeface-gear

      Public archive
      A flywheel gear to remove facial structure from MRI images.
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 8, 2025Sep 8, 2025

    • DICOM-to-MIPS

      Public archive
      Generates MIP png images, given a DICOM archive
      Shell
      •0•1•0•0•Updated Sep 8, 2025Sep 8, 2025

    • fsl-fslhd

      Public archive
      Python
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • Ants_RegistrationSynQuick

      Public archive
      Python
      •1•0•0•1•Updated Sep 8, 2025Sep 8, 2025

    • Gear-Building-Tutorial

      Public archive
      repositories for the gear building tutorial
      Python
      •2•1•1•0•Updated Sep 8, 2025Sep 8, 2025

    • redcap

      Public archive
      Python
      •1•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • hcp-func

      Public archive
      Python
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • hcp-icafix

      Public archive
      HCP ICAFIX pipeline
      Shell
      •2•1•2•1•Updated Sep 8, 2025Sep 8, 2025

    • hcp-struct

      Public archive
      Python
      •0•0•1•0•Updated Sep 8, 2025Sep 8, 2025

    • freesurfer-recon-all

      Public archive
      Gear that runs FreeSurfer v7.2.0 Release (July 19, 2021)
      freesurferrecon-all
      freesurferrecon-all
      Shell
      •
      MIT License
      •3•3•0•2•Updated Sep 8, 2025Sep 8, 2025

    • extract-cmrr-physio

      Public archive
      Extract physiological log files from encoded "_PHYSIO" DICOM file generated by CMRR MB sequences (>=R015, >=VD13A)
      Python
      •0•0•2•0•Updated Sep 8, 2025Sep 8, 2025

    • dicom-mr-classifier

      Public archive
      Python
      •4•0•0•1•Updated Sep 8, 2025Sep 8, 2025

    • deid_fork

      Public archive
      best effort anonymization for medical images using python
      Python
      •
      MIT License
      •57•0•0•0•Updated May 29, 2025May 29, 2025

    • mriqc

      Public archive
      No-reference image quality metrics for quality assessment of MRI
      Shell
      •4•1•0•0•Updated Jul 9, 2024Jul 9, 2024

    • fsl-base

      Public
      Build contexts for base images containing various FSL versions
      Python
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024
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