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@fmfi-compbio Computational Biology Research Group at Comenius University in Bratislava

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    44 repositories

    • jamang-code

      Public
      Code used for Jaminaea angkorensis analysis
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 26, 2026Apr 26, 2026

    • mad

      Public
      Webpage of Data Management course
      HTML
      •0•1•0•0•Updated Apr 24, 2026Apr 24, 2026

    • snp-activity

      Public
      HTML
      •0•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • viz

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • mbi

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Dec 26, 2025Dec 26, 2025

    • pridav_tutorials

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • kdiff

      Public
      C++
      •0•1•0•0•Updated Sep 4, 2025Sep 4, 2025

    • assembly-scripts

      Public
      A selection of scripts useful for genome assembly.
      Perl
      •
      MIT License
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • admm-pruning

      Public
      Python
      •
      MIT License
      •2•30•2•0•Updated Jul 22, 2024Jul 22, 2024

    • mcdp2

      Public
      Tool for colocalization analysis for genomic annotations with genomic contexts
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 17, 2024Jun 17, 2024

    • canParSR23

      Public
      Assembly of yeast Candida parapsilosis strain SR23
      Gnuplot
      •0•0•0•0•Updated May 18, 2024May 18, 2024

    • neural-network-merging

      Public
      Jupyter Notebook
      •2•6•0•1•Updated Sep 20, 2023Sep 20, 2023

    • warpstr

      Public
      Determining tandem repeat lengths using raw nanopore signals.
      Python
      •
      Other
      •1•15•4•0•Updated Sep 11, 2023Sep 11, 2023

    • plasgraph2-datasets

      Public
      Datasets for training and testing plasgraph2
      0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • nadavca

      Public
      NAnopore DAta Variant CAller
      Python
      •
      Other
      •1•1•0•0•Updated Jun 27, 2023Jun 27, 2023

    • virpool

      Public
      Tool for Model-Based Estimation of SARS-CoV-2 Variant Proportions in Wastewater Samples
      Python
      •0•4•0•0•Updated Jun 19, 2023Jun 19, 2023

    • pande-mic-dashboard

      Public
      Python
      •0•0•0•0•Updated May 25, 2023May 25, 2023

    • pande-mic

      Public
      python & snake-make pipeline for live monitoring of nanopore sequenicng runs.
      bioinformaticssequencing
      bioinformaticssequencing
      Python
      •0•0•0•0•Updated May 25, 2023May 25, 2023

    • y-mtptm

      Public
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Apr 9, 2023Apr 9, 2023

    • mcdp2-reproducibility

      Public
      Shell
      •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • mc-overlaps

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Oct 15, 2022Oct 15, 2022

    • pfp_wg

      Public
      C
      •3•1•0•0•Updated Aug 12, 2022Aug 12, 2022

    • deepnano-blitz

      Public
      Very fast ONT basecaller
      Rust
      •
      MIT License
      •11•52•4•1•Updated Jun 17, 2022Jun 17, 2022

    • mc-overlaps-reproducibility

      Public
      0•0•0•0•Updated Jan 13, 2022Jan 13, 2022

    • transducer_decoder

      Public
      Rust
      •
      Apache License 2.0
      •0•0•2•0•Updated Dec 1, 2021Dec 1, 2021

    • osprey

      Public
      Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.
      C++
      •
      Apache License 2.0
      •1•15•0•0•Updated Oct 6, 2021Oct 6, 2021

    • heron

      Public
      HAC nanopore basecaller
      Python
      •
      Apache License 2.0
      •2•6•1•0•Updated Oct 6, 2021Oct 6, 2021

    • rampart

      Public
      Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
      JavaScript
      •
      GNU General Public License v3.0
      •34•0•0•2•Updated Sep 25, 2021Sep 25, 2021

    • surveillance-itat-supplement

      Public
      0•0•0•0•Updated Aug 7, 2021Aug 7, 2021

    • bcg-supplement

      Public
      Supplementary data for "Time-adjusted Analysis Shows Weak Associations Between BCG Vaccination Policy and COVID-19 Disease Progression"
      0•0•0•0•Updated Aug 6, 2021Aug 6, 2021
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