Repositories list

• trimal

  Public
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

  trimmingmultiple-sequence-alignmentbioinformatics-tool

  trimmingmultiple-sequence-alignmentbioinformatics-tool

  C++

  •

  GNU General Public License v3.0

  •4747 forks•258258 stars•3333 issues•44 pull requests•Updated Apr 26, 2026Apr 26, 2026

• treecript

  Public
  A set of python scripts to monitor, collect, and visualize metrics of a given Linux process or a give command line

  steerselixir-steers

  steerselixir-steers

  Python

  •

  GNU General Public License v3.0

  •1414 forks•55 stars•1111 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• beacon-template-ui

  Public
  EGA - CRG - BSC beacon ui

  JavaScript

  •

  Apache License 2.0

  •88 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• openEBench-nuxt

  Public
  Vue Client for the OpenEBench Micro Frontends

  openebench

  openebench

  JavaScript

  •

  Apache License 2.0

  •33 forks•22 stars•55 issues•1313 pull requests•Updated Apr 23, 2026Apr 23, 2026

• research-software-etl

  Public
  Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources

  Python

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• WfExS-backend

  Public
  Workflow Execution Service Backend

  workflowsresearch-objectesg+ 4

  workflowsresearch-objectesgeosc-lifewfexsejp-rdeosc-entrust

  Python

  •

  Apache License 2.0

  •66 forks•2121 stars•2727 issues•11 pull request•Updated Apr 20, 2026Apr 20, 2026

• openEBench-nuxt-v3

  Public
  OpenEBench Micro Frontends. Nuxt 3 version

  vuenuxtjs2024

  vuenuxtjs2024

  Vue

  •

  Apache License 2.0

  •00 forks•00 stars•1414 issues•66 pull requests•Updated Apr 17, 2026Apr 17, 2026

• python-groovy-parser

  Public
  Repo with a proof of concept of Groovy parser

  Python

  •

  Apache License 2.0

  •11 fork•22 stars•11 issue•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• wiktionary-term-fetcher

  Public
  Wiktionary term fetcher, written in python

  pythonwiktionarywfexs

  pythonwiktionarywfexs

  Python

  •

  GNU Lesser General Public License v2.1

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• fega-mm

  Public
  HTML

  •44 forks•33 stars•44 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• openVRE-core-dev

  Public
  Open Virtual Research Environment development version

  vre

  vre

  JavaScript

  •33 forks•00 stars•11 issue•11 pull request•Updated Apr 9, 2026Apr 9, 2026

• crypt4ghfs

  Public
  A fuse layer showing Crypt4GH encrypted files as if they were decrypted

  Python

  •33 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• tessap

  Public
  TESSAP: A docker shim which submits commands to a GA4GH TES service

  esg

  esg

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•22 pull requests•Updated Apr 6, 2026Apr 6, 2026

• fairsoft-core

  Public
  Evaluation logic for FAIRsoft indicators and scores

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• opeb-pub-enricher

  Public
  OpenEBench metadata citations enricher

  openebench

  openebench

  Python

  •

  GNU Lesser General Public License v2.1

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• benchmarking-data-model

  Public
  OpenEBench Benchmarking Data Model repository

  benchmarkingbackenddata-model+ 5

  benchmarkingbackenddata-modelscientificvreopenebenchelixir-europeelixir-spain

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •77 forks•22 stars•77 issues•00 pull requests•Updated Mar 28, 2026Mar 28, 2026

• SEED-ALS

  Public
  Web portal presenting results and visualizations from the multi-omics analyses performed within the SEED-ALS project.

  TypeScript

  •

  GNU Affero General Public License v3.0

  •33 forks•11 star•88 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• upptime

  Public template
  GitHub Actions uptime monitor & status page by @AnandChowdhary

  JSON

  •

  MIT License

  •1k1k forks•00 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• oeb-metrics-importer

  Public
  Import publications information from OEB metrics into the Software Observatory

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• sourceforge-importer

  Public
  Retrieves Bioinformatics software metadata from Sourceforge

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• github-importer

  Public
  Imports GitHub metadata from repositories into the Software Observatory database.

  openebenchsoftware-observatory

  openebenchsoftware-observatory

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• toolshed-importer

  Public
  Toolshed importer for the Software Observatory

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• bioconductor-importer

  Public
  Bioconductor importer for Software Observatory

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• bioconda-importer

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• ro-terms-wfexs

  Public
  Repository for creating new terms for Research Objects

  ro-cratewfexswrroc

  ro-cratewfexswrroc

  Python

  •1313 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• FAIRsoft_indicators

  Public
  Specification of FAIRsoft indicators, by OpenEBench.

  fairresearch-softwarefairness-indicators

  fairresearch-softwarefairness-indicators

  HTML

  •

  MIT License

  •11 fork•11 star•00 issues•11 pull request•Updated Mar 10, 2026Mar 10, 2026

• observatory-api

  Public
  Software Observatory API

  fairsoftfastapifair-software+ 1

  fairsoftfastapifair-softwaresoftware-metadata

  Python

  •

  MIT License

  •00 forks•11 star•11 issue•00 pull requests•Updated Mar 10, 2026Mar 10, 2026

• oeb-visualizations

  Public
  Library of data visualizations for OpenEBench

  vueplotlyjsopenebench

  vueplotlyjsopenebench

  HTML

  •

  MIT License

  •00 forks•00 stars•22 issues•2121 pull requests•Updated Mar 5, 2026Mar 5, 2026

• ENTRUST_TRE_Requirements_Repository

  Public
  ENTRUST TRE Requirements Repository

  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• impact-data

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1.1k1.1k forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026