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    15 repositories

    • cerberus

      Public
      Attentive multi-headed and highly trained companion to sequence-to-function deep-learning models
      Python
      •0•1•0•0•Updated Apr 23, 2026Apr 23, 2026

    • Stag2

      Public
      Stag2 Paper code from chualec
      Shell
      •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • crispr-screen

      Public
      Python
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • FOXA1_GEMM

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • lopass

      Public
      Call variants from gVCF file.
      C++
      •
      MIT License
      •1•4•1•0•Updated May 12, 2025May 12, 2025

    • TahoeM100-tutorial

      Public
      This is a repository which hosts instructions to use the Tahoe100M dataset
      Python
      •
      MIT License
      •0•0•0•0•Updated May 4, 2025May 4, 2025

    • pysamstats

      Public
      A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
      Python
      •47•0•0•0•Updated Apr 6, 2025Apr 6, 2025

    • tpo-public-v2.5

      Public
      R
      •0•0•0•0•Updated Nov 16, 2024Nov 16, 2024

    • NSD2_req_subunit

      Public
      Code for Paper : NSD2 is a requisite subunit of the AR/FOXA1 neo-enhanceosome in promoting prostate tumorigenesis
      R
      •
      Apache License 2.0
      •1•2•0•0•Updated Jul 26, 2024Jul 26, 2024

    • single-cell-Databases

      Public
      MIT License
      •2•5•0•0•Updated Jul 19, 2024Jul 19, 2024

    • hpseq

      Public
      high-performance next-gen sequencing tools based on htslib, seqtk, and klib
      C
      •
      MIT License
      •1•0•0•0•Updated Aug 18, 2023Aug 18, 2023

    • HLAProphet

      Public
      Python
      •1•0•0•0•Updated Aug 4, 2023Aug 4, 2023

    • hapster

      Public
      Python
      •0•1•8•0•Updated Jun 12, 2022Jun 12, 2022

    • tagtile

      Public
      TAGTILE Probes and Code
      R
      •0•0•0•0•Updated Oct 1, 2019Oct 1, 2019

    • cnvex

      Public
      CNVex
      R
      •
      MIT License
      •1•2•1•0•Updated Feb 7, 2019Feb 7, 2019
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