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    12 repositories

    • mesoSPIM-control

      Public
      Image acquisition software for mesoSPIM light-sheet microscopes.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •17•46•6•1•Updated Mar 31, 2026Mar 31, 2026

    • benchtop-hardware

      Public
      Hardware documentation for mesoSPIM-Bechtop microscope project
      HTML
      •
      GNU General Public License v3.0
      •5•28•0•1•Updated Mar 17, 2026Mar 17, 2026

    • mesoSPIM-hardware-documentation

      Public
      Hardware documentation for the mesoSPIM microscope project
      GNU General Public License v3.0
      •4•34•2•0•Updated Aug 21, 2025Aug 21, 2025

    • image-processing

      Public
      Collection of python notebooks for mesoSPIM image processing (file format conversion, etc)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 27, 2025Feb 27, 2025

    • optical-simulations

      Public
      Proof of principle simulations of excitation and detection optical arms in mesoSPIM systems
      GNU General Public License v3.0
      •0•1•0•0•Updated May 30, 2024May 30, 2024

    • mesoSPIM-PSFanalysis

      Public
      Analysis code for light-sheet PSFs
      Jupyter Notebook
      •
      MIT License
      •0•7•1•0•Updated Mar 18, 2024Mar 18, 2024

    • mesoSPIM-lazy-loader

      Public
      Lazy loader napari plugin for mesoSPIM datasets
      viewernapari-pluginlightsheet
      viewernapari-pluginlightsheet
      Python
      •
      GNU General Public License v3.0
      •0•2•3•0•Updated Apr 6, 2023Apr 6, 2023

    • mesoSPIM-python-tools

      Public
      Collection of general-purpose tools for handling mesoSPIM data with Python.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 6, 2023Apr 6, 2023

    • pipython

      Public
      PIPython is a collection of Python modules to access a PI device and process GCS data.
      Python
      •
      Other
      •3•0•0•0•Updated Oct 14, 2019Oct 14, 2019

    • mesoSPIMmat

      Public
      MATLAB tools for handling mesoSPIM data
      matlabimagingmesospim
      matlabimagingmesospimlightsheet
      MATLAB
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated Sep 16, 2019Sep 16, 2019

    • mesoSPIM-color-projection

      Public
      Code for the depth-to-color coding of image stacks
      MATLAB
      •0•4•1•0•Updated May 13, 2019May 13, 2019

    • mesoSPIM-powerpoint-documentation

      Public
      Powerpoint-based documentation of the mesoSPIM project
      0•2•0•0•Updated Dec 6, 2018Dec 6, 2018
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