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    • A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
      Python
      Other
      228130Updated Apr 25, 2026Apr 25, 2026
    • Analysis of artifacts in high throughput sequencing data from genomic DNA.
      HTML
      Other
      1092Updated Apr 24, 2026Apr 24, 2026
    • plate-map

      Public
      A flexible tool for defining the contents of 96 well plates.
      JavaScript
      GNU Affero General Public License v3.0
      155270Updated Apr 21, 2026Apr 21, 2026
    • bamslice

      Public
      slices a bam file into chunks of interleaved fastq for efficient downstream processing
      Rust
      GNU Affero General Public License v3.0
      0200Updated Apr 21, 2026Apr 21, 2026
    • EM-seq

      Public
      Tools and Data related to Enzymatic Methylation Sequencing
      Nextflow
      GNU Affero General Public License v3.0
      83482Updated Apr 20, 2026Apr 20, 2026
    • Nextflow
      GNU Affero General Public License v3.0
      0000Updated Apr 15, 2026Apr 15, 2026
    • fatools

      Public
      A Python library for performing DNA fragment-analysis
      Python
      GNU Lesser General Public License v3.0
      12010Updated Feb 3, 2026Feb 3, 2026
    • MazF cleavage specificity data analysis
      HTML
      GNU Affero General Public License v3.0
      0000Updated Jan 20, 2026Jan 20, 2026
    • NEBNext RSV A/B Multiplex PCR sequencing primers
      GNU Affero General Public License v3.0
      1100Updated Nov 25, 2025Nov 25, 2025
    • Tools to assess called methylation in low mappability regions (as defined by bismap). Aligner MapQ does not always align with low mappability
      TeX
      GNU Affero General Public License v3.0
      0040Updated Nov 6, 2025Nov 6, 2025
    • Details and analysis recommendations for use with the NEBNext Flu A Integrated Indexing Primer Module (NEB #E3436S)
      GNU General Public License v3.0
      0000Updated Oct 23, 2025Oct 23, 2025
    • Computational pipeline to measure DNA polymerase fidelity (second strand DNA synthesis)
      Perl
      GNU Affero General Public License v3.0
      0000Updated Oct 17, 2025Oct 17, 2025
    • iwc

      Public
      Intergalactic Workflow Commission
      Vue
      90000Updated Jun 27, 2025Jun 27, 2025
    • a service to allow people to register primers to be monitored for intersecting variants and be notified if new variants arise
      Ruby
      GNU Affero General Public License v3.0
      3439Updated Mar 21, 2025Mar 21, 2025
    • A dashboard for Unchained Labs Uncle data visualization written in R using Shiny.
      R
      GNU Affero General Public License v3.0
      0080Updated Feb 26, 2025Feb 26, 2025
    • This is an attempt to streamline 96 well assembly / combination of ONT WPS submissions to the Sequencing Core
      JavaScript
      0100Updated Sep 30, 2024Sep 30, 2024
    • Advanced examples of how to use the Domainator bioinformatics software suite
      Jupyter Notebook
      MIT License
      0000Updated Aug 1, 2024Aug 1, 2024
    • Workflow to analyze FFPE ngs data
      Nextflow
      GNU Affero General Public License v3.0
      0001Updated Jun 28, 2024Jun 28, 2024
    • NEBNext iiMS Influenza A Library Prep for ONT
      GNU Affero General Public License v3.0
      0200Updated Jun 3, 2024Jun 3, 2024
    • ampseer

      Public
      Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. …
      Rust
      GNU Affero General Public License v3.0
      11550Updated Feb 27, 2024Feb 27, 2024
    • unclePy

      Public
      A parser for Unchained Labs Uncle HDF5 binary files written in Python.
      Python
      GNU Affero General Public License v3.0
      1040Updated Sep 21, 2023Sep 21, 2023
    • opentrons

      Public
      Collection of scripts which can be used in relation to Opentrons OT-2 Liquid Handling Robot
      Python
      1000Updated Aug 3, 2023Aug 3, 2023
    • This program examines a BAM or SAM stream for reads that contain multiple Cs in non-CpG context. It markes these reads with a tag (XX:Z:UC) and sets the vendor …
      Python
      GNU Affero General Public License v3.0
      1340Updated May 16, 2023May 16, 2023
    • Demultiplexes a MiSeq, NextSeq or HiSeq run using Picard's IlluminaBasecallsToFastq
      Nextflow
      1100Updated Mar 28, 2023Mar 28, 2023
    • A Rails form builder plugin with semantically rich and accessible markup.
      Ruby
      MIT License
      624000Updated Feb 6, 2023Feb 6, 2023
    • poreCov

      Public
      SARS-CoV-2 workflow for nanopore sequence data
      Nextflow
      GNU General Public License v3.0
      18000Updated Aug 23, 2022Aug 23, 2022
    • Galaxy Workflows
      GNU Affero General Public License v3.0
      1000Updated Jul 19, 2022Jul 19, 2022
    • usegalaxy.* common tools
      Shell
      67000Updated Jul 11, 2022Jul 11, 2022
    • VarSkip

      Public
      VarSkip multiplex PCR designs for SARS-CoV-2 sequencing
      GNU Affero General Public License v3.0
      91400Updated Jun 14, 2022Jun 14, 2022
    • Perl
      Apache License 2.0
      25000Updated Jun 10, 2022Jun 10, 2022
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