Repositories list

• automation

  Public
  Modular, Scalable Phenomic Data Processing Pipelines

  pythonpipelinehpc+ 9

  pythonpipelinehpcdistributed-computingplantphenotypinglettucephenomicssorghumworkqueue+ 2

  Python

  •

  MIT License

  •44 forks•55 stars•11 issue•11 pull request•Updated Apr 8, 2026Apr 8, 2026

• environmental_association

  Public
  Environmental association for thermal and PS2 data from the gantry.

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• MeteorologicalSensor_Postprocessing

  Public
  Extracts per-date and per-season weather data from ClimaVue50 data after HDF5 extraction

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2026Jan 5, 2026

• phytooracle_data

  Public
  Python

  •00 forks•00 stars•22 issues•00 pull requests•Updated Oct 20, 2025Oct 20, 2025

• 3d_landmark_selection

  Public
  3D Module: GUI for point cloud landmark selection

  Python

  •

  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated Oct 6, 2025Oct 6, 2025

• 3d_transformation_selection

  Public
  Python

  •00 forks•00 stars•33 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• 3d_neighbor_removal

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 3, 2025Sep 3, 2025

• 3d_entropy_features

  Public
  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Aug 26, 2025Aug 26, 2025

• SorghumPartNet

  Public
  DGCNN Segmentation of Sorghum (focal plant and leaf segmentation)

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•44 stars•11 issue•00 pull requests•Updated May 27, 2025May 27, 2025

• flir_bin_to_tif_s17

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 21, 2025Mar 21, 2025

• flir_bin_to_tif_s11

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 20, 2025Mar 20, 2025

• flir_bin_to_tif_s10

  Public
  Conversion of FLIR bin files to geoTIFFs with calibration

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 20, 2025Mar 20, 2025

• phenotype_extraction_update

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2024Nov 4, 2024

• rgb_plant_clustering

  Public
  Clustering of plant identifications over a season for individual plant tracking

  Python

  •22 forks•11 star•00 issues•00 pull requests•Updated Jun 18, 2024Jun 18, 2024

• panicle_gt_mp_association

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 11, 2024Jun 11, 2024

• 3d_postprocessing

  Public
  A repository for geo-correcting the ply files after they are merged and aligned and GCPs have been selected by the users manually.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• 3d_orthomosaic_generator

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• 3d_preprocessing

  Public
  In this repository we preprocess the 3D data. It includes merging west and east and aligning north and south using RANSAC and finding passes that might contain …

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• psii_fluorescence_aggregation

  Public
  Aggregate PSII fluorescence segmentation outputs to Fv/Fm

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• psii_segmentation

  Public
  Segmentation of pixels to experimentally-determined Fv/Fm contributions

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• psii_bin_to_tif

  Public
  Conversion of PSII fluorescence bin files to GeoTIFF images

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• flir_plant_temp

  Public
  Extraction of mean temperatures of individual plants

  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• rgb_bin_to_tif

  Public
  RGB bin file conversion to geoTIFF

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2024Jun 9, 2024

• rgb_flir_plant_detection

  Public
  Detection of individual plants (RGB/FLIR) using a Faster R-CNN detection network

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_stitch_plots

  Public
  Stitching of geoTiff images (RGB/FLIR) into agricultural plots

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_plot_clip_geojson

  Public
  RGB/FLIR clipping to agricultural plots

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_edit_gps

  Public
  Edit corner coordinates of RGB/FLIR geoTIFFs

  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_collect_gps

  Public
  Collection of corner coordinates for RGB/FLIR geoTIFFs

  Python

  •00 forks•11 star•00 issues•11 pull request•Updated Jun 8, 2024Jun 8, 2024

• uav_plot_clip

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 8, 2024Jun 8, 2024

• rgb_tgi_extraction

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 8, 2024Jun 8, 2024