All

89 repositories

imp
Public
The Integrative Modeling Platform
python c-plus-plus structural-biology
python c-plus-plus structural-biology protein-structure integrative-modeling
C++
•
GNU General Public License v3.0
•34•81•64•0•Updated Apr 25, 2026Apr 25, 2026
lab_website
Public
Source files for parts of the Sali Lab website
website jinja2
website jinja2
HTML
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 23, 2026Apr 23, 2026
imp_website
Public
Website for the IMP project
php website
php website
PHP
•
Creative Commons Attribution Share Alike 4.0 International
•1•0•0•0•Updated Apr 23, 2026Apr 23, 2026
tutorial_tools
Public
🛠 Support infrastructure useful for all IMP tutorials
python tutorial build-tools
python tutorial build-tools
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Apr 22, 2026Apr 22, 2026
imp_brownian_dynamics_tutorial
Public
Tutorial for running Brownian dynamics simulations using IMP
tutorial integrative-modeling brownian-dynamics
tutorial integrative-modeling brownian-dynamics
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•1•0•0•0•Updated Apr 22, 2026Apr 22, 2026
imp_using_cpp_tutorial
Public
Tutorial on using IMP as a library in other C++ projects
c-plus-plus tutorial integrative-modeling
c-plus-plus tutorial integrative-modeling
CMake
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 22, 2026Apr 22, 2026
foxs_tutorial
Public
Tutorial for fitting against SAXS data using FoXS and MultiFoXS
tutorial command-line small-angle-xray
tutorial command-line small-angle-xray integrative-modeling
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 22, 2026Apr 22, 2026
imp_valgrind_tutorial
Public
Tutorial on debugging IMP code with Valgrind
c-plus-plus tutorial integrative-modeling
c-plus-plus tutorial integrative-modeling
CMake
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 22, 2026Apr 22, 2026
imp_analysis_tutorial
Public
Python
•
Other
•2•0•1•0•Updated Apr 22, 2026Apr 22, 2026
imp_tutorial
Public
Tutorial that demonstrates the modeling of RNA Polymerase II using Electron Microscopy density and chemical crosslinks
python tutorial integrative-modeling
python tutorial integrative-modeling
Python
•
Creative Commons Attribution Share Alike 4.0 International
•5•3•0•0•Updated Apr 22, 2026Apr 22, 2026
imp_coding_tutorial
Public
Introduction to writing IMP code
c-plus-plus tutorial integrative-modeling
c-plus-plus tutorial integrative-modeling
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 22, 2026Apr 22, 2026
pyRMSD
Public
pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is speciall…
C++
•
Other
•14•4•0•0•Updated Apr 20, 2026Apr 20, 2026
imp_nightly_builds
Public
Infrastructure to build and test IMP on a nightly basis
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 18, 2026Apr 18, 2026
rmf
Public
The library to support reading and writing of RMF files.
python c-plus-plus structural-biology
python c-plus-plus structural-biology protein-structure integrative-modeling
C++
•
Apache License 2.0
•0•9•7•0•Updated Apr 17, 2026Apr 17, 2026
pmi
Public
Python Modeling Interface
python structural-biology protein-structure
python structural-biology protein-structure integrative-modeling
Python
•12•14•37•0•Updated Apr 17, 2026Apr 17, 2026
imp_deposition_tutorial
Public
Introduction to depositing IMP models in PDB-IHM
tutorial archival integrative-modeling
tutorial archival integrative-modeling deposition binder-ready
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 17, 2026Apr 17, 2026
cross_linking_tutorial
Public
Introduction to working with cross-linking data using IMP
tutorial structural-biology integrative-modeling
tutorial structural-biology integrative-modeling binder-ready
Jupyter Notebook
•
Creative Commons Attribution Share Alike 4.0 International
•0•1•0•0•Updated Apr 17, 2026Apr 17, 2026
SSEThread
Public
Integrative threading of protein structure using secondary structure elements
Python
•
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Apr 13, 2026Apr 13, 2026
homebrew-salilab
Public
🍻 Sali Lab formulae for homebrew
ruby homebrew formulae
ruby homebrew formulae science
Ruby
•
Creative Commons Attribution Share Alike 4.0 International
•0•1•0•0•Updated Apr 10, 2026Apr 10, 2026
IHMValidation
Public
Validation software for integrative models deposited to PDB
Python
•
MIT License
•3•3•17•1•Updated Apr 7, 2026Apr 7, 2026
actin_tutorial
Public
IMP/PMI tutorial, modeling the complex of actin and tropomodulin-gelsolin chimera
tutorial integrative-modeling
tutorial integrative-modeling
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•1•0•Updated Apr 4, 2026Apr 4, 2026
imp_spatiotemporal_tutorial
Public
Tutorial for computing spatiotemporal integrative models in IMP
Python
•
Creative Commons Attribution Share Alike 4.0 International
•0•0•0•0•Updated Apr 3, 2026Apr 3, 2026
optrep
Public
IMP module for optimal coarse-grained bead representation
Python
•
GNU Lesser General Public License v2.1
•1•0•5•0•Updated Apr 3, 2026Apr 3, 2026
npctransport
Public
IMP module for simulating transport through the NPC.
C++
•3•3•6•0•Updated Apr 1, 2026Apr 1, 2026
bayesianem
Public
MP module for Bayesian multi-scale modeling of macromolecular structures based on cryo-electron microscopy density maps
Python
•
GNU Lesser General Public License v3.0
•0•0•0•0•Updated Mar 31, 2026Mar 31, 2026
threading
Public
IMP module to sample sequence threading
Python
•0•1•0•1•Updated Mar 31, 2026Mar 31, 2026
domino3
Public
Experimental DOMINO variant using traditional inference
C++
•
GNU Lesser General Public License v2.1
•0•1•0•0•Updated Mar 31, 2026Mar 31, 2026
raindrops
Public
Data driven optimal rigid bodies from protein complexes
Python
•
GNU General Public License v2.0
•0•0•0•0•Updated Mar 31, 2026Mar 31, 2026
imp-sampcon
Public
Scripts to assess sampling convergence and exhaustiveness
Python
•
GNU General Public License v2.0
•7•3•4•1•Updated Mar 31, 2026Mar 31, 2026
conda-recipes
Public
Recipes for the conda package manager
conda
conda
Shell
•
Creative Commons Attribution Share Alike 4.0 International
•2•3•0•0•Updated Mar 26, 2026Mar 26, 2026

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Sali Lab

All

All

89 repositories

imp

lab_website

imp_website

tutorial_tools

imp_brownian_dynamics_tutorial

imp_using_cpp_tutorial

foxs_tutorial

imp_valgrind_tutorial

imp_analysis_tutorial

imp_tutorial

imp_coding_tutorial

pyRMSD

imp_nightly_builds

rmf

pmi

imp_deposition_tutorial

cross_linking_tutorial

SSEThread

homebrew-salilab

IHMValidation

actin_tutorial

imp_spatiotemporal_tutorial

optrep

npctransport

bayesianem

threading

domino3

raindrops

imp-sampcon

conda-recipes

All

All

Repositories list

89 repositories