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    23 repositories

    • GPC

      Public
      Deep generative model of genetic variation data based on Probabilistic Circuits
      Jupyter Notebook
      •0•4•0•0•Updated Apr 21, 2026Apr 21, 2026

    • CACTI

      Public
      [ICML 2025 Spotlight] CACTI recycles missing value patterns present in the data and unstructued feature context information to achieve SOTA imputation accuracy …
      Python
      •
      GNU General Public License v3.0
      •1•7•0•0•Updated Mar 20, 2026Mar 20, 2026

    • PyRHE

      Public
      A unified and efficient Python framework for large-scale genomics heritability estimation
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Dec 20, 2025Dec 20, 2025

    • GENIE

      Public
      Gene Environment Interaction Estimator
      C++
      •
      MIT License
      •3•12•0•0•Updated Dec 11, 2025Dec 11, 2025

    • ENGINE

      Public
      Python
      •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • FAME

      Public
      This is the software for FAst Marginal Epistasis test (FAME)
      C++
      •
      MIT License
      •4•13•0•0•Updated Oct 21, 2025Oct 21, 2025

    • AutoComplete

      Public
      Python
      •3•26•0•0•Updated Oct 8, 2025Oct 8, 2025

    • Simulator

      Public
      Efficient large scale phenotype simulator
      C++
      •
      MIT License
      •0•2•0•0•Updated Sep 29, 2025Sep 29, 2025

    • raptor

      Public
      [ICML 2025 Spotlight] Raptor computes expressive embeddings of medical volumes with no training.
      medical-imagingrandom-projectionsraptor
      medical-imagingrandom-projectionsraptorfoundation-models
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•16•0•0•Updated Jul 10, 2025Jul 10, 2025

    • QuadKAST

      Public
      A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis Analysis in Complex Traits
      Jupyter Notebook
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • FastKAST

      Public
      Jupyter Notebook
      •2•12•0•0•Updated Dec 31, 2024Dec 31, 2024

    • SUMRHE

      Public
      Summary statistics-based Randomized Haseman-Elston regression
      Python
      •0•7•0•0•Updated Oct 24, 2024Oct 24, 2024

    • RHE-mc

      Public
      Randomized Haseman–Elston regression for Multi-variance Components
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•0•1•Updated Jul 2, 2024Jul 2, 2024

    • OrientAGraph

      Public
      C++
      •
      GNU General Public License v3.0
      •2•13•5•0•Updated May 13, 2024May 13, 2024

    • SCORE

      Public
      SCalable genetic CORrelation Estimator
      C++
      •0•9•7•0•Updated May 23, 2023May 23, 2023

    • SCOPE

      Public
      Scalable population structure inference
      C++
      •
      MIT License
      •3•18•3•0•Updated Oct 22, 2022Oct 22, 2022

    • ProPCA

      Public
      Fast EM algorithm for a Probabilistic PCA model for Genotype data
      C++
      •
      MIT License
      •6•21•3•2•Updated Jan 14, 2022Jan 14, 2022

    • afr_archaic_maps

      Public
      0•0•0•0•Updated Jul 23, 2021Jul 23, 2021

    • saber

      Public
      ScAlaBle Estimator Regressor
      Rust
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 5, 2021Mar 5, 2021

    • ArchIE

      Public
      A statistical framework for reference-free inference of archaic local ancestry
      C
      •3•16•1•0•Updated Nov 8, 2019Nov 8, 2019

    • RHE-reg

      Public
      Randomized HE regression estimator
      C++
      •2•5•3•0•Updated Apr 30, 2019Apr 30, 2019

    • ANCESTOR

      Public
      Infer ancestries of each parent of an admixed individual
      Python
      •0•0•0•0•Updated Mar 4, 2019Mar 4, 2019

    • dating

      Public
      Estimate dates of admixture events from LD decay
      Roff
      •0•0•0•0•Updated Mar 4, 2019Mar 4, 2019
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