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    • GPC

      Public
      Deep generative model of genetic variation data based on Probabilistic Circuits
      Jupyter Notebook
      0400Updated Apr 21, 2026Apr 21, 2026
    • CACTI

      Public
      [ICML 2025 Spotlight] CACTI recycles missing value patterns present in the data and unstructued feature context information to achieve SOTA imputation accuracy …
      Python
      GNU General Public License v3.0
      1700Updated Mar 20, 2026Mar 20, 2026
    • PyRHE

      Public
      A unified and efficient Python framework for large-scale genomics heritability estimation
      Jupyter Notebook
      MIT License
      0500Updated Dec 20, 2025Dec 20, 2025
    • GENIE

      Public
      Gene Environment Interaction Estimator
      C++
      MIT License
      31200Updated Dec 11, 2025Dec 11, 2025
    • ENGINE

      Public
      Python
      0000Updated Nov 19, 2025Nov 19, 2025
    • FAME

      Public
      This is the software for FAst Marginal Epistasis test (FAME)
      C++
      MIT License
      41300Updated Oct 21, 2025Oct 21, 2025
    • Python
      32600Updated Oct 8, 2025Oct 8, 2025
    • Simulator

      Public
      Efficient large scale phenotype simulator
      C++
      MIT License
      0200Updated Sep 29, 2025Sep 29, 2025
    • raptor

      Public
      [ICML 2025 Spotlight] Raptor computes expressive embeddings of medical volumes with no training.
      Python
      BSD 3-Clause "New" or "Revised" License
      31600Updated Jul 10, 2025Jul 10, 2025
    • QuadKAST

      Public
      A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis Analysis in Complex Traits
      Jupyter Notebook
      0000Updated Jan 8, 2025Jan 8, 2025
    • FastKAST

      Public
      Jupyter Notebook
      21200Updated Dec 31, 2024Dec 31, 2024
    • SUMRHE

      Public
      Summary statistics-based Randomized Haseman-Elston regression
      Python
      0700Updated Oct 24, 2024Oct 24, 2024
    • RHE-mc

      Public
      Randomized Haseman–Elston regression for Multi-variance Components
      C++
      BSD 3-Clause "New" or "Revised" License
      2901Updated Jul 2, 2024Jul 2, 2024
    • C++
      GNU General Public License v3.0
      21350Updated May 13, 2024May 13, 2024
    • SCORE

      Public
      SCalable genetic CORrelation Estimator
      C++
      0970Updated May 23, 2023May 23, 2023
    • SCOPE

      Public
      Scalable population structure inference
      C++
      MIT License
      31830Updated Oct 22, 2022Oct 22, 2022
    • ProPCA

      Public
      Fast EM algorithm for a Probabilistic PCA model for Genotype data
      C++
      MIT License
      62132Updated Jan 14, 2022Jan 14, 2022
    • 0000Updated Jul 23, 2021Jul 23, 2021
    • saber

      Public
      ScAlaBle Estimator Regressor
      Rust
      Apache License 2.0
      1000Updated Mar 5, 2021Mar 5, 2021
    • ArchIE

      Public
      A statistical framework for reference-free inference of archaic local ancestry
      C
      31610Updated Nov 8, 2019Nov 8, 2019
    • RHE-reg

      Public
      Randomized HE regression estimator
      C++
      2530Updated Apr 30, 2019Apr 30, 2019
    • ANCESTOR

      Public
      Infer ancestries of each parent of an admixed individual
      Python
      0000Updated Mar 4, 2019Mar 4, 2019
    • dating

      Public
      Estimate dates of admixture events from LD decay
      Roff
      0000Updated Mar 4, 2019Mar 4, 2019
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