Repositories list

• StrucTTY

  Public
  An Interactive, Terminal-Native Protein Structure Viewer

  C++

  •

  GNU General Public License v3.0

  •33 forks•2222 stars•00 issues•00 pull requests•Updated Apr 26, 2026Apr 26, 2026

• folddisco

  Public
  Fast indexing and search of discontinuous motifs in protein structures

  bioinformaticsprotein-structuremotif+ 1

  bioinformaticsprotein-structuremotiffoldseek

  Rust

  •

  GNU General Public License v3.0

  •1616 forks•137137 stars•1515 issues•11 pull request•Updated Apr 23, 2026Apr 23, 2026

• Metabuli-App

  Public
  Vue

  •

  GNU General Public License v3.0

  •33 forks•3737 stars•11 issue•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• Metabuli

  Public
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

  bioinformaticstaxonomymetagenomics+ 2

  bioinformaticstaxonomymetagenomicsk-mertaxonomic-classification

  C++

  •

  GNU General Public License v3.0

  •1515 forks•173173 stars•3333 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• afesm-analysis

  Public
  Jupyter Notebook

  •22 forks•44 stars•00 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• Metabuli-regression

  Public
  Regression tests for Metabuli

  Shell

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• alphafold

  Public
  Open source code for AlphaFold.

  Python

  •

  Apache License 2.0

  •2.6k2.6k forks•1212 stars•00 issues•22 pull requests•Updated Mar 16, 2026Mar 16, 2026

• foldseek-regression

  Public
  Regression test for foldseek

  Shell

  •44 forks•33 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• unicore

  Public
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5

  bioinformaticsprotein-structurephylogenetics

  bioinformaticsprotein-structurephylogenetics

  Rust

  •

  GNU General Public License v3.0

  •1010 forks•8787 stars•33 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• folddisco-upgrade

  Public
  scripts and datas related to validation and analysis of Folddisco

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• foldseek

  Public
  Foldseek enables fast and sensitive comparisons of large structure sets.

  bioinformaticsclusteringprotein-structure+ 1

  bioinformaticsclusteringprotein-structurealignments

  C

  •

  GNU General Public License v3.0

  •150150 forks•1.2k1.2k stars•174174 issues•99 pull requests•Updated Mar 10, 2026Mar 10, 2026

• build-containers

  Public
  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• foldcomp

  Public
  Compressing protein structures effectively with torsion angles

  bioinformaticscompressionprotein-structure

  bioinformaticscompressionprotein-structure

  C++

  •

  MIT License

  •2323 forks•193193 stars•2929 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• foldmason

  Public
  Multiple Protein Structure Alignment at Scale with FoldMason

  bioinformaticsprotein-structuremsa

  bioinformaticsprotein-structuremsa

  C

  •

  GNU General Public License v3.0

  •2828 forks•272272 stars•2525 issues•00 pull requests•Updated Jan 31, 2026Jan 31, 2026

• afesm-clusters-web

  Public
  Vue

  •

  GNU General Public License v3.0

  •33 forks•22 stars•00 issues•00 pull requests•Updated Jan 7, 2026Jan 7, 2026

• foldmason-analysis

  Public
  R

  •00 forks•22 stars•11 issue•00 pull requests•Updated Oct 10, 2025Oct 10, 2025

• folddisco-analysis

  Public
  Scripts to benchmark folddisco

  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated Aug 19, 2025Aug 19, 2025

• ufcg

  Public
  UFCG: Universal Fungal Core Genes

  bioinformaticsgenomicsphylogenetics+ 2

  bioinformaticsgenomicsphylogeneticsfungimarker-gene-analysis

  Java

  •

  GNU General Public License v3.0

  •00 forks•3636 stars•2323 issues•00 pull requests•Updated Jul 29, 2025Jul 29, 2025

• taxoview

  Public
  A Vue.js plugin for generating interactive Sankey diagrams using Kraken report data

  visualizationbioinformaticsvue+ 3

  visualizationbioinformaticsvuetaxonomysankeytaxonomic-classification

  Vue

  •

  GNU General Public License v3.0

  •33 forks•1010 stars•11 issue•11 pull request•Updated Jul 22, 2025Jul 22, 2025

• mmseqs2-gpu-analysis

  Public
  Shell

  •

  MIT License

  •22 forks•2020 stars•00 issues•00 pull requests•Updated May 14, 2025May 14, 2025

• probeit

  Public
  Design capture probes

  Python

  •

  GNU General Public License v3.0

  •22 forks•1010 stars•00 issues•00 pull requests•Updated Apr 28, 2025Apr 28, 2025

• SeekRank

  Public
  Rank homologous protein sequences based on a regressor trained on experimental measures

  Jupyter Notebook

  •

  MIT License

  •11 fork•1616 stars•00 issues•00 pull requests•Updated Apr 11, 2025Apr 11, 2025

• afdb-clusters-web

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •33 forks•44 stars•11 issue•00 pull requests•Updated Mar 29, 2025Mar 29, 2025

• foldseek-multimer-analysis

  Public
  Shell

  •22 forks•77 stars•00 issues•00 pull requests•Updated Feb 1, 2025Feb 1, 2025

• bfvd-analysis

  Public
  Big Fantastic Virus Database (BFVD): Code used for analyses

  Shell

  •00 forks•22 stars•11 issue•00 pull requests•Updated Dec 16, 2024Dec 16, 2024

• colabfold-protocol

  Public
  ColabFold protocol

  Jupyter Notebook

  •88 forks•5858 stars•22 issues•00 pull requests•Updated Oct 17, 2024Oct 17, 2024

• ufcg-web

  Public
  UFCG website

  HTML

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 2, 2024Jul 2, 2024

• foldseek-analysis

  Public
  Scripts to benchmark and train foldseek

  Jupyter Notebook

  •55 forks•4141 stars•99 issues•11 pull request•Updated May 22, 2024May 22, 2024

• petasearch

  Public
  🧬 Efficient parallelized peta-scale protein database search

  C

  •

  GNU General Public License v3.0

  •00 forks•4040 stars•55 issues•00 pull requests•Updated Jan 4, 2024Jan 4, 2024

• petasearch-regression

  Public
  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 4, 2024Jan 4, 2024