fix issues with template and bump version

Author: antheas

.github/workflows/python-publish.yml

@@ -33,7 +33,7 @@ jobs:
     - name: Build package
       run: python -m build -s
     - name: Publish package
-      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
+      uses: pypa/gh-action-pypi-publish@release/v1
       with:
         user: __token__
         password: ${{ secrets.PYPI_API_TOKEN }}

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pasteur"
-version = "0.0.5"
+version = "0.1.0"
 authors = [
   { name="Kapenekakis Antheas", email="antheas@cs.aau.dk" },
 ]

src/pasteur/cli.py

@@ -8,7 +8,7 @@
     import logging
 
     logger = logging.getLogger(__name__)
-    logger.warn(
+    logger.warning(
         "Pasteur project not found in the current directory "
         + "(settings.py file doesn't contain `PASTEUR_MODULES = ...`). "
         + "Disabling Pasteur commands."

src/pasteur/extras/__init__.py

@@ -14,19 +14,19 @@ def get_recommended_datasets() -> list[Dataset | View]:
     from .datasets.texas import TexasDataset
     from .views.adult import TabAdultView
     from .views.mimic import MimicMmCoreView, MimicTabAdmissions
-    from .views.texas import TexasChargesView, TexasBaseView, TexasBillionView
+    # from .views.texas import TexasChargesView, TexasBaseView, TexasBillionView
 
     return [
         # Views and Datasets
         AdultDataset(),
         MimicDataset(),
         TexasDataset(),
-        TexasChargesView(),
-        TexasBaseView(),
+        # TexasChargesView(),
+        # TexasBaseView(),
         TabAdultView(),
         # MimicMmCoreView,
         MimicTabAdmissions(),
-        TexasBillionView(),
+        # TexasBillionView(),
     ]
 
 

src/pasteur/kedro/runner/common.py

@@ -42,9 +42,9 @@ def run_expanded_node(
         session_id = cast(str, session_id)
 
         for name in node.inputs:
-            hook_manager.hook.before_dataset_loaded(dataset_name=name)  # type: ignore
+            hook_manager.hook.before_dataset_loaded(node=node, dataset_name=name)  # type: ignore
             inputs[name] = catalog.load(name)
-            hook_manager.hook.after_dataset_loaded(dataset_name=name, data=inputs[name])  # type: ignore
+            hook_manager.hook.after_dataset_loaded(node=node, dataset_name=name, data=inputs[name])  # type: ignore
 
         is_async = False
 
@@ -83,9 +83,9 @@ def run_expanded_node(
     else:
         try:
             for name, data in outputs.items():
-                hook_manager.hook.before_dataset_saved(dataset_name=name, data=data)  # type: ignore
+                hook_manager.hook.before_dataset_saved(node=node, dataset_name=name, data=data)  # type: ignore
                 catalog.save(name, data)
-                hook_manager.hook.after_dataset_saved(dataset_name=name, data=data)  # type: ignore
+                hook_manager.hook.after_dataset_saved(node=node, dataset_name=name, data=data)  # type: ignore
         except Exception as e:
             if not (isinstance(e, RuntimeError) and str(e) == "subprocess failed"):
                 # Prevent printing traceback for subprocesses that crash

src/pasteur/kedro/utils.py

@@ -26,6 +26,6 @@ def get_pasteur_modules() -> Callable | list[type] | None:
 
     if settings.PASTEUR_MODULES == sentinel:
         return None
-    if settings.PASTEUR_MODULES is None:
+    if settings.PASTEUR_MODULES is None or settings.PASTEUR_MODULES == ...:
         return get_recommended_modules
     return settings.PASTEUR_MODULES