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README.md

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<a href="https://pytorch.org/get-started/locally/"><img alt="PyTorch" src="https://img.shields.io/badge/PyTorch-ee4c2c?logo=pytorch&logoColor=white"></a>
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<a href="https://hydra.cc/"><img alt="Config: Hydra" src="https://img.shields.io/badge/Config-Hydra-89b8cd"></a>
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[![GitHub license](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/peizhenbai/MapDiff/blob/main/LICENSE)
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[![arXiv](https://img.shields.io/badge/arXiv-2412.07815-b31b1b.svg)](http://arxiv.org/abs/2412.07815)
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## Introduction
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We provide the inference code to generate the predicted sequence from arbitrary pbd files using the trained MapDiff model. Please refer `model_inference.ipnb` for the detailed usage.
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## Citation
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Please cite our [paper](http://arxiv.org/abs/2412.07815) if you find our work useful in your own research.
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```
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@article{bai2024mapdiff,
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title={Mask prior-guided denoising diffusion improves inverse protein folding},
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author={Peizhen Bai and Filip Miljković and Xianyuan Liu and Leonardo De Maria and Rebecca Croasdale-Wood and Owen Rackham and Haiping Lu},
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year={2024},
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journal={arXiv preprint arXiv:2412.07815},
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}
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```
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## Acknowledgements and References
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The code implementation is inspired and partially based on earlier works [3-6]. Thanks for their contributions to the open-source community.
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