MetaboFlow/.gitignore at main · ponytech-dev/MetaboFlow · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
.Rhistory
.RData
Result/
TestResult/
TestResult_v2/

# Temp/test scripts
debug_*.r
test_*.r
run_wf1.r

# MetaboAnalystR cache
*.qs
*.csv
!MetaboFlow_v1.r

# Allow example_results (tracked in git)
!example_results/
!example_results/**

# Python
__pycache__/
*.pyc
.venv/
*.egg-info/
dist/
.mypy_cache/
.pytest_cache/
*.h5
*.metabodata

# R renv
renv/
.Rprofile

# Docker
.docker/

# IDE
.vscode/
.idea/

# SQLite dev databases
*.db

# Node.js
node_modules/
.next/

# uv
.python-version
uv.lock

# E2E test data and results (large binary files)
tests/e2e/data/faahKO_raw/
tests/e2e/data/MTBLS733_raw/
tests/e2e/data/MTBLS733_mzML/
tests/e2e/data/MTBLS733_mzML_subset/
tests/e2e/data/*.txt
tests/e2e/tools/
tests/e2e/results/
tests/e2e/results_qe/
tests/e2e/results_qe_v2/

# Spectral libraries (shared, not part of this repo)
spectral_libraries

*.CDF
*.cdf
*.mzML
*.raw
tests/e2e/results_qe_v3/