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fix: pkgdown fix
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_pkgdown.yml

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@@ -40,16 +40,16 @@ navbar:
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reference:
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- title: Loading and correcting TrackMate data
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desc: >
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To start, TrackMate XML data needs to be read into R. It may need recalibrating
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if the data were captured with incorrect parameters.
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To start, TrackMate XML data needs to be read into R. It may need
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recalibrating if the data were captured with incorrect parameters.
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contents:
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- readTrackMateXML
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- correctTrackMateData
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- title: Automated reports
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desc: >
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TrackMateR can be used manually to have fine control over your analysis, however
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if you just want to analyse your data with default parameters, these two functions will
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process one dataset, or many
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TrackMateR can be used manually to have fine control over your analysis,
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however if you just want to analyse your data with default parameters,
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these two functions will process one dataset, or many
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contents:
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- reportDataset
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- compareDatasets
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- fittingJD
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- title: Generating reports and summaries
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desc: >
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Reports and summaries are collections of plots. They can be generated automatically
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using the automated workflows, or they can be made manually after fine-tuning the analysis
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of track dynamics.
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Reports and summaries are collections of plots. They can be generated
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automatically using the automated workflows, or they can be made manually
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after fine-tuning the analysis of track dynamics.
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contents:
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- makeSummaryReport
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- makeComparison
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- title: Plotting functions
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desc: >
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The autoimated workflows and the reports that can be generated with TrackMateR
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use several different plotting functions.
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The autoimated workflows and the reports that can be generated with
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TrackMateR use several different plotting functions.
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contents:
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- plot_tm_MSD
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- plot_tm_NMSD
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- plot_tm_width
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- title: Analysis of non-TrackMate data
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desc: >
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TrackMateR can read and process csv files in a similar way to TrackMate XML outputs.
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These are typically "ground truth" data sets that have been generated synthetically,
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but could come from some other package.
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TrackMateR can read and process csv files in a similar way to TrackMate XML
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outputs.
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These are typically "ground truth" data sets that have been generated
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synthetically, but could come from some other package.
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contents:
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- compareGTDatasets
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- readGTFile
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- title: Converting TrackMate data
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desc: >
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TrackMateR can convert an XML to another format so that you can easily use the data in other software, or share it with collaborators who don't use R.
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TrackMateR can convert an XML to another format so that you can easily use
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the data in other software, or share it with collaborators who don't use R.
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contents:
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- convertTrackmateXML2CSV
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- convertTrackMateXML2CSV

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