Is there any detailed documentation about what the different tables in the parsed dvobject infer?
For example, I was trying to find the pathways linked to the drugs. I could see two tables I could use for this: DrugBank_data$drugs$pathway$general_information and DrugBank_data$drugs$pathway$pathway_drugs where DrugBank_data contains the parsed dvobject. In either table, there are smpdb_id and drugbank_id columns which make me assume both should give the association between drugs and pathways. But when I checked for drug DB00114, I realized that the general_information table lists much fewer pathways than the pathway_drugs table. The general_information seems to be the one listed on the DrugBank drug page.
I think detailed documentation on what each of these tables means would be a good help.
Is there any detailed documentation about what the different tables in the parsed
dvobjectinfer?For example, I was trying to find the pathways linked to the drugs. I could see two tables I could use for this:
DrugBank_data$drugs$pathway$general_informationandDrugBank_data$drugs$pathway$pathway_drugswhereDrugBank_datacontains the parseddvobject. In either table, there aresmpdb_idanddrugbank_idcolumns which make me assume both should give the association between drugs and pathways. But when I checked for drug DB00114, I realized that thegeneral_informationtable lists much fewer pathways than thepathway_drugstable. Thegeneral_informationseems to be the one listed on the DrugBank drug page.I think detailed documentation on what each of these tables means would be a good help.