NeuralGraph/_quarto.yml at main · saalfeldlab/NeuralGraph · GitHub

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project:
  type: website
  output-dir: docs
  render:
    - "*.qmd"

website:
  title: "NeuralGraph: LLM-in-the-Loop"
  description: "Autonomous GNN Training via LLM-Guided Exploration"
  navbar:
    background: primary
    left:
      - href: index.qmd
        text: Home
      - text: System
        menu:
          - href: architecture.qmd
            text: Architecture
          - href: experiment-loop.qmd
            text: Experiment Loop
      - text: Analysis
        menu:
          - href: epistemic-analysis.qmd
            text: Epistemic Analysis
          - href: results.qmd
            text: Results
          - href: exploration-gallery.qmd
            text: Exploration Gallery
      - text: Case Studies
        menu:
          - href: case-baseline.qmd
            text: Fully Connected Baseline
          - href: case-low-rank.qmd
            text: Low-Rank Connectivity
          - href: case-sparse.qmd
            text: Sparse Connectivity
      - href: gnn-model.qmd
        text: GNN Model
    right:
      - icon: github
        href: https://github.com/allierc/NeuralGraph
        aria-label: GitHub

  page-footer:
    center: "NeuralGraph - Janelia Research Campus"

format:
  html:
    grid:
      body-width: 1200px
    theme:
      light: flatly
      dark: darkly
    css: styles.css
    mermaid:
      theme: neutral
    mermaid-format: js
    toc: true
    toc-depth: 3
    toc-expand: 2
    smooth-scroll: true
    code-fold: true
    code-tools: true
    code-copy: true
    highlight-style: github
    anchor-sections: true

execute:
  freeze: auto