Remove NDTP protocol implementation (#168)

Author: maxhodak

setup.py

@@ -1,29 +1,9 @@
-from setuptools import setup, find_packages, Extension
-from Cython.Build import cythonize
+from setuptools import setup, find_packages
 from pathlib import Path
-import os
-
-extra_compile_args = []
-if os.name == "nt":  # Windows
-    extra_compile_args = ["/w"]
-else:  # macOS and Linux
-    extra_compile_args = [
-        "-Wno-unreachable-code",
-        "-Wno-unreachable-code-fallthrough",
-        "-O3",
-    ]
 
 this_directory = Path(__file__).parent
 long_description = (this_directory / "README.md").read_text()
 
-extensions = [
-    Extension(
-        "synapse.utils.ndtp",
-        ["synapse/utils/ndtp.pyx"],
-        extra_compile_args=extra_compile_args,
-    ),
-]
-
 setup(
     name="science-synapse",
     version="2.4.0",
@@ -33,14 +13,9 @@
     packages=find_packages(include=["synapse", "synapse.*"]),
     long_description=long_description,
     long_description_content_type="text/markdown",
-    ext_modules=cythonize(
-        extensions,
-        compiler_directives={"language_level": "3"},
-    ),
     python_requires=">=3.9",
     install_requires=[
         "coolname",
-        "crcmod",
         "dearpygui",
         "grpcio-tools",
         "numexpr>=2.8.7",

synapse/nodes/__init__.py

@@ -4,7 +4,7 @@
 
 from synapse.api.node_pb2 import NodeConfig, NodeType
 from synapse.server.status import Status
-from synapse.utils.ndtp_types import SynapseData
+from synapse.utils.types import SynapseData
 
 
 class BaseNode(object):

synapse/server/nodes/base.py

@@ -11,7 +11,7 @@
 )
 from synapse.server.nodes.base import BaseNode
 from synapse.server.status import Status
-from synapse.utils.ndtp_types import ElectricalBroadbandData, SynapseData
+from synapse.utils.types import ElectricalBroadbandData, SynapseData
 
 
 def get_filter_coefficients(method, low_cutoff_hz, high_cutoff_hz, sample_rate):

synapse/server/nodes/spectral_filter.py

@@ -10,7 +10,7 @@
 from synapse.api.tap_pb2 import TapConnection, TapType
 from synapse.api.datatype_pb2 import BroadbandFrame
 from synapse.server.status import Status
-from synapse.utils.ndtp_types import ElectricalBroadbandData
+from synapse.utils.types import ElectricalBroadbandData
 
 def r_sample(bit_width: int):
     return random.randint(0, 2**bit_width - 1)

synapse/simulator/nodes/broadband_source.py

@@ -6,7 +6,7 @@
 from synapse.api.nodes.spike_source_pb2 import SpikeSourceConfig
 from synapse.server.nodes.base import BaseNode
 from synapse.server.status import Status
-from synapse.utils.ndtp_types import SpiketrainData
+from synapse.utils.types import SpiketrainData
 
 def r_sample(bit_width: int):
     return random.randint(0, 2**bit_width - 1)

synapse/simulator/nodes/spike_source.py

@@ -4,7 +4,7 @@
 from synapse.simulator.nodes.broadband_source import BroadbandSource
 from synapse.api.nodes.signal_config_pb2 import SignalConfig, ElectrodeConfig
 from synapse.api.channel_pb2 import Channel
-from synapse.utils.ndtp_types import ElectricalBroadbandData
+from synapse.utils.types import ElectricalBroadbandData
 
 
 @pytest.mark.asyncio