diff --git a/Cargo.lock b/Cargo.lock
index 01fb92c..d6b837b 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -105,9 +105,12 @@ checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8"
 
 [[package]]
 name = "bit-vec"
-version = "0.8.0"
+version = "0.9.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5e764a1d40d510daf35e07be9eb06e75770908c27d411ee6c92109c9840eaaf7"
+checksum = "b71798fca2c1fe1086445a7258a4bc81e6e49dcd24c8d0dd9a1e57395b603f51"
+dependencies = [
+ "serde",
+]
 
 [[package]]
 name = "bitflags"
@@ -353,6 +356,7 @@ checksum = "843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c"
 dependencies = [
  "crc32fast",
  "miniz_oxide",
+ "zlib-rs",
 ]
 
 [[package]]
@@ -481,9 +485,9 @@ dependencies = [
 
 [[package]]
 name = "lexical-core"
-version = "0.8.5"
+version = "1.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2cde5de06e8d4c2faabc400238f9ae1c74d5412d03a7bd067645ccbc47070e46"
+checksum = "7d8d125a277f807e55a77304455eb7b1cb52f2b18c143b60e766c120bd64a594"
 dependencies = [
  "lexical-parse-float",
  "lexical-parse-integer",
@@ -494,53 +498,46 @@ dependencies = [
 
 [[package]]
 name = "lexical-parse-float"
-version = "0.8.5"
+version = "1.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "683b3a5ebd0130b8fb52ba0bdc718cc56815b6a097e28ae5a6997d0ad17dc05f"
+checksum = "52a9f232fbd6f550bc0137dcb5f99ab674071ac2d690ac69704593cb4abbea56"
 dependencies = [
  "lexical-parse-integer",
  "lexical-util",
- "static_assertions",
 ]
 
 [[package]]
 name = "lexical-parse-integer"
-version = "0.8.6"
+version = "1.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6d0994485ed0c312f6d965766754ea177d07f9c00c9b82a5ee62ed5b47945ee9"
+checksum = "9a7a039f8fb9c19c996cd7b2fcce303c1b2874fe1aca544edc85c4a5f8489b34"
 dependencies = [
  "lexical-util",
- "static_assertions",
 ]
 
 [[package]]
 name = "lexical-util"
-version = "0.8.5"
+version = "1.0.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5255b9ff16ff898710eb9eb63cb39248ea8a5bb036bea8085b1a767ff6c4e3fc"
-dependencies = [
- "static_assertions",
-]
+checksum = "2604dd126bb14f13fb5d1bd6a66155079cb9fa655b37f875b3a742c705dbed17"
 
 [[package]]
 name = "lexical-write-float"
-version = "0.8.5"
+version = "1.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "accabaa1c4581f05a3923d1b4cfd124c329352288b7b9da09e766b0668116862"
+checksum = "50c438c87c013188d415fbabbb1dceb44249ab81664efbd31b14ae55dabb6361"
 dependencies = [
  "lexical-util",
  "lexical-write-integer",
- "static_assertions",
 ]
 
 [[package]]
 name = "lexical-write-integer"
-version = "0.8.5"
+version = "1.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e1b6f3d1f4422866b68192d62f77bc5c700bee84f3069f2469d7bc8c77852446"
+checksum = "409851a618475d2d5796377cad353802345cba92c867d9fbcde9cf4eac4e14df"
 dependencies = [
  "lexical-util",
- "static_assertions",
 ]
 
 [[package]]
@@ -597,9 +594,9 @@ dependencies = [
 
 [[package]]
 name = "noodles"
-version = "0.80.0"
+version = "0.109.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "15ea7a4ffa2e3684ce476156d199e388b465d860d702b739f3e39257ded7d174"
+checksum = "4876a9caa25647b9ddc09883263b61fd6500ec7a4394f31daa5428026d5eb415"
 dependencies = [
  "noodles-bam",
  "noodles-bgzf",
@@ -609,14 +606,13 @@ dependencies = [
 
 [[package]]
 name = "noodles-bam"
-version = "0.67.0"
+version = "0.88.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "53bc69bd00891e3e1c5faffe4f55d00c94d9e53d4bdbe63ec8c7e2b881f3bc85"
+checksum = "ff57687677d53f36c3574d2350a4668825ff2fa762b6d086f779d3eeaa96b0aa"
 dependencies = [
  "bstr",
- "byteorder",
- "bytes",
  "indexmap",
+ "memchr",
  "noodles-bgzf",
  "noodles-core",
  "noodles-csi",
@@ -625,11 +621,10 @@ dependencies = [
 
 [[package]]
 name = "noodles-bgzf"
-version = "0.33.0"
+version = "0.46.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3b50aaa8f0a3c8a0b738b641a6d1a78d9fd30a899ab2d398779ee3c4eb80f1c1"
+checksum = "37290f565045fd2775b549e62dffca7e1afadc70d8d5a3a2ef19609eb3d8193b"
 dependencies = [
- "byteorder",
  "bytes",
  "crossbeam-channel",
  "flate2",
@@ -637,21 +632,21 @@ dependencies = [
 
 [[package]]
 name = "noodles-core"
-version = "0.15.0"
+version = "0.19.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c5a8c6b020d1205abef2b0fab4463a6c5ecc3c8f4d561ca8b0d1a42323376200"
+checksum = "53e1e8a419dbba0e4000b0e60830b124138c7f2277ad556463506f1a81d32d17"
 dependencies = [
  "bstr",
 ]
 
 [[package]]
 name = "noodles-csi"
-version = "0.38.0"
+version = "0.55.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a69e79dbc09bd0cb86d29469ed29066e9a163bce6640527b343bdea458144618"
+checksum = "c9c846d8128bd80b18d891b13cb9e0bc1d364429d6ab3ec3c83939f3d32ba105"
 dependencies = [
  "bit-vec",
- "byteorder",
+ "bstr",
  "indexmap",
  "noodles-bgzf",
  "noodles-core",
@@ -659,9 +654,9 @@ dependencies = [
 
 [[package]]
 name = "noodles-fastq"
-version = "0.14.0"
+version = "0.22.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c596792c857f37e6a85e2cf1e68578f5b70f867cad028bf95c1e2b5d7c9c84eb"
+checksum = "56a2d83379751760aec332a2b6a2060852e2d393bfc1d3ef481c97b0e88372f8"
 dependencies = [
  "bstr",
  "memchr",
@@ -669,9 +664,9 @@ dependencies = [
 
 [[package]]
 name = "noodles-sam"
-version = "0.64.0"
+version = "0.84.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "72da678e9332b32a916f8c5d5a7c4324da11891bc7148077744566981acaf00c"
+checksum = "baa5367d794dd6b766b7e9fe7ae93accfc9288f590ac61a881c29b7b307dbad2"
 dependencies = [
  "bitflags",
  "bstr",
@@ -944,6 +939,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e"
 dependencies = [
  "serde_core",
+ "serde_derive",
 ]
 
 [[package]]
@@ -984,12 +980,6 @@ version = "1.15.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03"
 
-[[package]]
-name = "static_assertions"
-version = "1.1.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f"
-
 [[package]]
 name = "strsim"
 version = "0.11.1"
@@ -1220,3 +1210,9 @@ dependencies = [
  "quote",
  "syn",
 ]
+
+[[package]]
+name = "zlib-rs"
+version = "0.6.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "3be3d40e40a133f9c916ee3f9f4fa2d9d63435b5fbe1bfc6d9dae0aa0ada1513"
diff --git a/Cargo.toml b/Cargo.toml
index e98b6a2..05559d9 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -33,7 +33,7 @@ log = "0.4"
 env_logger = "0.11"
 memmap2 = "0.9"
 byteorder = "1"
-noodles = { version = "0.80", features = ["fastq", "sam", "bam", "bgzf"] }
+noodles = { version = "0.109", features = ["fastq", "sam", "bam", "bgzf"] }
 bstr = "1"
 flate2 = "1"
 rayon = "1"