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Update interpretability.ipynb
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use_cases/interpretability.ipynb

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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Using SHAP values and IntegratedGradients for cell type classification interpretabilty"
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"# Using SHAP values and IntegratedGradients for cell type classification interpretability"
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]
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},
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{
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}
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],
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"source": [
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"# We select a small number of genes here, so our later interpretabilty analysis will be fast\n",
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"# We select a small number of genes here, so our later interpretability analysis will be fast\n",
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"sc.pp.highly_variable_genes(\n",
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" adata,\n",
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" n_top_genes=200,\n",
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"Next we will apply the 2 techniques for features interpretabilty and compare between them"
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"Next we will apply the 2 techniques for features interpretability and compare between them"
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]
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},
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{

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