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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1- name : run notebook
1+ name : run notebook macos
22
33on :
44 workflow_call :
@@ -27,19 +27,23 @@ jobs:
2727 steps :
2828 - uses : actions/checkout@v4
2929
30- - name : Create Conda environment and install dependencies
31- run : |
32- conda init bash
33- source ~/.bash_profile
34- conda activate scvi
30+ # - name: Create Conda environment and install dependencies
31+ # run: |
32+ # conda init bash
33+ # source ~/.bash_profile
34+ # conda activate scvi
35+
36+ # - name: Install dependencies
37+ # run: |
38+ # python -m pip install --upgrade pip wheel uv
39+ # python -m pip install "scvi-tools[tests]"
40+ # python -m pip install jax-metal
41+ # python -m ipykernel install
3542
36- - name : Install dependencies
43+ - name : Install Python kernel
3744 run : |
38- python -m pip install --upgrade pip wheel uv
39- python -m pip install "scvi-tools[tests]"
40- python -m pip install jax-metal
4145 python -m ipykernel install
42-
46+
4347 - name : Run notebook
4448 run : |
4549 python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }}
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