Update PoissonVI.ipynb

ori-kron-wis · web-flow · commit 7b272a26eb33 · 2025-07-14T10:35:15.000+03:00
diff --git a/atac/PoissonVI.ipynb b/atac/PoissonVI.ipynb
@@ -1321,7 +1321,7 @@
    ],
    "source": [
     "da_peaks = model.differential_accessibility(\n",
-    "    adata, groupby=POISSONVI_CLUSTERS_KEY, group1=\"3\", two_sided=False\n",
+    "    adata, groupby=POISSONVI_CLUSTERS_KEY, group1=\"3\", mode=\"vanilla\", two_sided=False\n",
     ")"
    ]
   },

Original file line number	Diff line number	Diff line change
`@@ -1321,7 +1321,7 @@`
`1321`	`1321`	`],`
`1322`	`1322`	`"source": [`
`1323`	`1323`	`"da_peaks = model.differential_accessibility(\n",`
`1324`		`- " adata, groupby=POISSONVI_CLUSTERS_KEY, group1=\"3\", two_sided=False\n",`
	`1324`	`+ " adata, groupby=POISSONVI_CLUSTERS_KEY, group1=\"3\", mode=\"vanilla\", two_sided=False\n",`
`1325`	`1325`	`")"`
`1326`	`1326`	`]`
`1327`	`1327`	`},`