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Update run_notebook_macos.yaml
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.github/workflows/run_notebook_macos.yaml

Lines changed: 9 additions & 9 deletions
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@@ -33,19 +33,19 @@ jobs:
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source ~/.bash_profile
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conda activate scvi
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# - name: Install dependencies
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# run: |
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# python -m pip install --upgrade pip wheel uv
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# python -m pip install "scvi-tools[tests]"
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# python -m pip install jax-metal
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip wheel uv
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python -m pip install "scvi-tools[tests]"
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python -m pip install jax-metal
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# - name: Install Python kernel
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# run: |
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# python -m ipykernel install --user
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- name: Install Python kernel
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run: |
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python -m ipykernel install --user
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- name: Run notebook
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run: |
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python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} --gpus all
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python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} --gpus all --accelerator cuda --devices auto
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- uses: peter-evans/create-pull-request@v5
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with:

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