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3333 source ~/.bash_profile
3434 conda activate scvi
3535
36- # - name: Install dependencies
37- # run: |
38- # python -m pip install --upgrade pip wheel uv
39- # python -m pip install "scvi-tools[tests]"
40- # python -m pip install jax-metal
36+ - name : Install dependencies
37+ run : |
38+ python -m pip install --upgrade pip wheel uv
39+ python -m pip install "scvi-tools[tests]"
40+ python -m pip install jax-metal
4141
42- # - name: Install Python kernel
43- # run: |
44- # python -m ipykernel install --user
42+ - name : Install Python kernel
43+ run : |
44+ python -m ipykernel install --user
4545
4646 - name : Run notebook
4747 run : |
48- python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} --gpus all
48+ python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} --gpus all --accelerator cuda --devices auto
4949
5050 - uses : peter-evans/create-pull-request@v5
5151 with :
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