update baseline SQL DB

- update pipeline URL's
- update default password

Author: dshao

sample_files/pegr_baseline.sql

@@ -1030,7 +1030,7 @@ CREATE TABLE `pipeline` (
 
 LOCK TABLES `pipeline` WRITE;
 /*!40000 ALTER TABLE `pipeline` DISABLE KEYS */;
-INSERT INTO `pipeline` VALUES (1,2,'paired','paired_002 workflow on Shiva','002','[[\"input_dataset_r1_output_stats\",\"fastqRead1\"],[\"input_dataset_r2_output_stats\",\"fastqRead2\"],[\"fastqc_output_stats\",\"fastqc\"],[\"fastqc_output_stats2\",\"fastqc\"],[\"mark_duplicates_bam_output_stats\",\"markDuplicates\"],[\"samtool_filter2_output_stats\",\"samtoolFilter\"],[\"pe_histogram_output_stats\",\"peHistogram\"],[\"bam_to_scidx_output_stats\",\"bamToScidx\"],[\"genetrack_output_stats\",\"genetrack\"],[\"bedtools_intersectbed_output_stats\",\"bedtoolsIntersect\"],[\"cwpair2_output_stats\",\"cwpair2\"],[\"extract_genomic_dna_output_stats\",\"extractGenomicDNA\"],[\"extract_genomic_dna_output_stats2\",\"extractGenomicDNA\"],[\"repeatmasker_wrapper_output_stats\",\"repeatMasker\"],[\"repeatmasker_wrapper_output_stats2\",\"repeatMasker\"],[\"meme_meme_output_stats\",\"meme\"],[\"meme_fimo_output_stats\",\"fimo\"],[\"extract_genomic_dna_output_stats3\",\"extractGenomicDNA\"],[\"fasta_nucleotide_color_plot_output_stats\",\"fourColorPlot\"],[\"tag_pileup_frequency_output_stats\",\"tagPileup\"]]','f2db41e1fa331b3e','https://chipexo-gw.aci.ics.psu.edu/workflow/display_by_id?id=f2db41e1fa331b3e'),(2,2,'single','single_002 workflow on Shiva','002','[[\"input_dataset_r1_output_stats\",\"fastqRead1\"],[\"fastqc_output_stats\",\"fastqc\"],[\"bwa_mem_output_stats_single\",\"bwaMem\"],[\"samtool_filter2_output_stats\",\"samtoolFilter\"],[\"bam_to_scidx_output_stats\",\"bamToScidx\"],[\"genetrack_output_stats\",\"genetrack\"],[\"bedtools_intersectbed_output_stats\",\"bedtoolsIntersect\"],[\"cwpair2_output_stats\",\"cwpair2\"],[\"extract_genomic_dna_output_stats\",\"extractGenomicDNA\"],[\"extract_genomic_dna_output_stats2\",\"extractGenomicDNA\"],[\"repeatmasker_wrapper_output_stats\",\"repeatMasker\"],[\"repeatmasker_wrapper_output_stats2\",\"repeatMasker\"],[\"meme_meme_output_stats\",\"meme\"],[\"meme_fimo_output_stats\",\"fimo\"],[\"extract_genomic_dna_output_stats3\",\"extractGenomicDNA\"],[\"fasta_nucleotide_color_plot_output_stats\",\"fourColorPlot\"],[\"tag_pileup_frequency_output_stats\",\"tagPileup\"]]','a799d38679e985db','https://chipexo-gw.aci.ics.psu.edu/workflow/display_by_id?id=a799d38679e985db');
+INSERT INTO `pipeline` VALUES (1,2,'paired','paired_002 workflow','002','[[\"input_dataset_r1_output_stats\",\"fastqRead1\"],[\"input_dataset_r2_output_stats\",\"fastqRead2\"],[\"fastqc_output_stats\",\"fastqc\"],[\"fastqc_output_stats2\",\"fastqc\"],[\"mark_duplicates_bam_output_stats\",\"markDuplicates\"],[\"samtool_filter2_output_stats\",\"samtoolFilter\"],[\"pe_histogram_output_stats\",\"peHistogram\"],[\"bam_to_scidx_output_stats\",\"bamToScidx\"],[\"genetrack_output_stats\",\"genetrack\"],[\"bedtools_intersectbed_output_stats\",\"bedtoolsIntersect\"],[\"cwpair2_output_stats\",\"cwpair2\"],[\"extract_genomic_dna_output_stats\",\"extractGenomicDNA\"],[\"extract_genomic_dna_output_stats2\",\"extractGenomicDNA\"],[\"repeatmasker_wrapper_output_stats\",\"repeatMasker\"],[\"repeatmasker_wrapper_output_stats2\",\"repeatMasker\"],[\"meme_meme_output_stats\",\"meme\"],[\"meme_fimo_output_stats\",\"fimo\"],[\"extract_genomic_dna_output_stats3\",\"extractGenomicDNA\"],[\"fasta_nucleotide_color_plot_output_stats\",\"fourColorPlot\"],[\"tag_pileup_frequency_output_stats\",\"tagPileup\"]]','f2db41e1fa331b3e','https://raw.githubusercontent.com/CEGRcode/pegr-galaxy_tools/main/workflows/paired_002.ga'),(2,2,'single','single_002 workflow','002','[[\"input_dataset_r1_output_stats\",\"fastqRead1\"],[\"fastqc_output_stats\",\"fastqc\"],[\"bwa_mem_output_stats_single\",\"bwaMem\"],[\"samtool_filter2_output_stats\",\"samtoolFilter\"],[\"bam_to_scidx_output_stats\",\"bamToScidx\"],[\"genetrack_output_stats\",\"genetrack\"],[\"bedtools_intersectbed_output_stats\",\"bedtoolsIntersect\"],[\"cwpair2_output_stats\",\"cwpair2\"],[\"extract_genomic_dna_output_stats\",\"extractGenomicDNA\"],[\"extract_genomic_dna_output_stats2\",\"extractGenomicDNA\"],[\"repeatmasker_wrapper_output_stats\",\"repeatMasker\"],[\"repeatmasker_wrapper_output_stats2\",\"repeatMasker\"],[\"meme_meme_output_stats\",\"meme\"],[\"meme_fimo_output_stats\",\"fimo\"],[\"extract_genomic_dna_output_stats3\",\"extractGenomicDNA\"],[\"fasta_nucleotide_color_plot_output_stats\",\"fourColorPlot\"],[\"tag_pileup_frequency_output_stats\",\"tagPileup\"]]','a799d38679e985db','https://raw.githubusercontent.com/CEGRcode/pegr-galaxy_tools/main/workflows/single_002.ga');
 /*!40000 ALTER TABLE `pipeline` ENABLE KEYS */;
 UNLOCK TABLES;
 
@@ -2406,7 +2406,7 @@ CREATE TABLE `user` (
 
 LOCK TABLES `user` WRITE;
 /*!40000 ALTER TABLE `user` DISABLE KEYS */;
-INSERT INTO `user` VALUES (1,6,'\0','\0',NULL,NULL,NULL,'','lab admin','$2a$10$/giOljS9vOY72gzp4p4.t.dE/UwOdEAX7Nhbajd2OzHeRZZDQgK2.','\0',NULL,'labadmin','BsdrDjUykrdcYQRAUuIXW7PgrvgQ2yw9');
+INSERT INTO `user` VALUES (1,6,'\0','\0',NULL,NULL,NULL,'','lab admin','{bcrypt}$2a$10$/giOljS9vOY72gzp4p4.t.dE/UwOdEAX7Nhbajd2OzHeRZZDQgK2.','\0',NULL,'labadmin','BsdrDjUykrdcYQRAUuIXW7PgrvgQ2yw9');
 /*!40000 ALTER TABLE `user` ENABLE KEYS */;
 UNLOCK TABLES;
 
@@ -2475,4 +2475,4 @@ UNLOCK TABLES;
 /*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */;
 /*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */;
 
--- Dump completed on 2021-06-21 18:11:21
+-- Dump completed on 2021-12-01 13:00:44