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update: docker environment, add ray
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FROM nvcr.io/nvidia/pytorch:22.09-py3
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RUN pip install -U pytorch-lightning[extra]
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RUN pip install seqchromloader
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RUN pip install seqchromloader==0.2.3
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RUN pip install seaborn
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RUN pip install "ray[tune]"
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RUN echo "deb [signed-by=/usr/share/keyrings/cloud.google.gpg] http://packages.cloud.google.com/apt cloud-sdk main" | tee -a /etc/apt/sources.list.d/google-cloud-sdk.list && curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key --keyring /usr/share/keyrings/cloud.google.gpg add - && apt-get update -y && apt-get install google-cloud-cli -y
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RUN apt install bedtools
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CMD jupyter lab --port=8889
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CMD ray start --head --num-gpus 1 ; jupyter lab --port=8889

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