Adding kshape binding (#42)

* Adding kshape binding

* Fix documentation

* Updating copyright year to 2019

* Testing clustering tests on Travis

* New tests for kmeans.

* New test for kmeans

Author: avilchess

.CI/travis/build_and_test.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-# Copyright (c) 2018 Shapelets.io
+# Copyright (c) 2019 Shapelets.io
 #
 # This Source Code Form is subject to the terms of the Mozilla Public
 # License, v. 2.0. If a copy of the MPL was not distributed with this

.CI/travis/install-arrayfire.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-# Copyright (c) 2018 Shapelets.io
+# Copyright (c) 2019 Shapelets.io
 #
 # This Source Code Form is subject to the terms of the Mozilla Public
 # License, v. 2.0. If a copy of the MPL was not distributed with this

.CI/travis/install-khiva.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-# Copyright (c) 2018 Shapelets.io
+# Copyright (c) 2019 Shapelets.io
 #
 # This Source Code Form is subject to the terms of the Mozilla Public
 # License, v. 2.0. If a copy of the MPL was not distributed with this

.CI/travis/install.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-# Copyright (c) 2018 Shapelets.io
+# Copyright (c) 2019 Shapelets.io
 #
 # This Source Code Form is subject to the terms of the Mozilla Public
 # License, v. 2.0. If a copy of the MPL was not distributed with this

.appveyor.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2018 Shapelets.io
+# Copyright (c) 2019 Shapelets.io
 #
 # This Source Code Form is subject to the terms of the Mozilla Public
 # License, v. 2.0. If a copy of the MPL was not distributed with this
@@ -27,8 +27,8 @@ before_build:
     - reg add HKCU\Software\Kitware\CMake\Packages\ArrayFire /v ArrayFire_CMake_DIR /d "C:\Program Files\ArrayFire\v3\cmake" /f
     - vcpkg install --triplet x64-windows gtest eigen3
     - ps: if ($env:INSTALL_KHIVA_METHOD -eq "installer"){
-            if(!(Test-Path -Path "C:\Program Files\Khiva" )){ appveyor DownloadFile "https://github.com/shapelets/khiva/releases/download/v0.1.0/khiva-v0.1.0-unattended.exe" -FileName khiva-v0.1.0-unattended.exe };
-            if(!(Test-Path -Path "C:\Program Files\Khiva" )){ .\khiva-v0.1.0-unattended.exe /S };
+            if(!(Test-Path -Path "C:\Program Files\Khiva" )){ appveyor DownloadFile "https://github.com/shapelets/khiva/releases/download/v0.2.0/khiva-v0.2.0-unattended.exe" -FileName khiva-v0.2.0-unattended.exe };
+            if(!(Test-Path -Path "C:\Program Files\Khiva" )){ .\khiva-v0.2.0-unattended.exe /S };
           }else{
             git clone -q https://github.com/shapelets/khiva.git C:\khiva-library ;
             cd C:\khiva-library;

.github/CODE_OF_CONDUCT.md

@@ -90,4 +90,4 @@ If some members of staff were angered by the incident, it is best to apologise t
 
 ## Attribution
 
-This Code of Conduct was adapted from both [Golang](https://golang.org/conduct) an the [Golang UK Conference](http://golanguk.com/conduct/).
+This Code of Conduct was adapted from both [Golang](https://golang.org/conduct) an the [Golang UK Conference](http://golanguk.com/conduct/).

.gitignore

@@ -104,4 +104,4 @@ ENV/
 ./docs/build/
 
 #IntelliJ files.
-.idea
+.idea

.travis.yml

@@ -1,4 +1,4 @@
-# Copyright (c) 2018 Shapelets.io
+# Copyright (c) 2019 Shapelets.io
 #
 # This Source Code Form is subject to the terms of the Mozilla Public
 # License, v. 2.0. If a copy of the MPL was not distributed with this

LICENSE.txt

@@ -360,4 +360,4 @@ Exhibit B - "Incompatible With Secondary Licenses" Notice
       This Source Code Form is "Incompatible
       With Secondary Licenses", as defined by
       the Mozilla Public License, v. 2.0.
-      
+      

benchmarks/matrix.py

@@ -0,0 +1,43 @@
+
+import scipy.io
+import matplotlib.pyplot as plt
+import khiva as kv
+import os
+import time
+
+print(kv.get_backend())
+os.chdir("/Users/antonio.vilches/repositories/khiva-python/benchmarks")
+
+print(os.getcwd())
+
+
+mat = scipy.io.loadmat('./sel102m.mat')
+plt.plot(range(len(mat['val'][1])), mat['val'][1])
+plt.show()
+
+start = time.time()
+
+l = 400
+lecg = len(mat['val'][1])
+min = 50000
+max = 60000
+
+b = mat['val'][1][min:max]
+a = kv.Array(b)
+a2 = kv.Array(b)
+profile, index = kv.stomp(a, a2, l)
+distance, index, subsequence = kv.find_best_n_discords(profile, index, l, 1)
+
+plt.plot(
+    range(len(mat['val'][1])),
+    mat['val'][1]
+)
+plt.plot(
+    range(len(mat['val'][1]))[int(min + subsequence.to_list()):int(min + subsequence.to_list() + l)],
+    mat['val'][1][int(min + subsequence.to_list()):int(min + subsequence.to_list() + l)]
+)
+
+plt.show()
+
+end = time.time()
+print("Execution time: " + str(end - start))