GEfetch2R/DESCRIPTION at main · showteeth/GEfetch2R · GitHub

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Package: GEfetch2R
Type: Package
Title: Access and Format Single-Cell RNA-Seq Datasets from Public Resources
Version: 0.7.3
Authors@R: c(
    person(given = "Yabing",
           family = "Song",
           role = c("aut", "cre"),
           email = "songyb0519@gmail.com"),
    person(given = "Jiaxin",
           family = "Gao",
           role = c("fnd", "aut"),
           email = "gaojx@im.ac.cn"),
    person(given = "Jianbin",
           family = "Wang",
           role = c("fnd", "aut"),
           email = ""),
    person("Gao Lab, Wang Lab and Collaborators", role = "ctb"))
Maintainer: Yabing Song <songyb0519@gmail.com>; Jiaxin Gao <gaojx@im.ac.cn>
Description: The goal of 'GEfetch2R' is to access and format single-cell RNA-seq datasets. It can be used to download single-cell RNA-seq
    datasets from widely used public resources, including GEO <https://www.ncbi.nlm.nih.gov/geo/>, Zenodo <https://zenodo.org/>,
    CELLxGENE <https://cellxgene.cziscience.com/>, Human Cell Atlas <https://www.humancellatlas.org/>, PanglaoDB <https://panglaodb.se/index.html>
    and UCSC Cell Browser <https://cells.ucsc.edu/>. And, it can also be used to perform object conversion between SeuratObject <https://satijalab.org/seurat/>,
    loom <http://loompy.org/>, h5ad <https://scanpy.readthedocs.io/en/stable/>, SingleCellExperiment <https://bioconductor.org/packages/release/bioc/html/scran.html>,
    CellDataSet <http://cole-trapnell-lab.github.io/monocle-release/> and cell_data_set <https://cole-trapnell-lab.github.io/monocle3/>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
biocViews:
Imports:
    Biobase,
    curl,
    data.table,
    dplyr,
    GEOquery,
    jsonlite,
    magrittr,
    Matrix,
    readxl,
    pbapply,
    purrr,
    rPanglaoDB,
    reticulate,
    Seurat,
    tibble,
    SingleCellExperiment,
    SummarizedExperiment,
    scater,
    LoomExperiment,
    httr,
    rlang,
    tidyr,
    DESeq2,
    xml2,
    R.utils
Suggests:
    knitr,
    rmarkdown,
    scRNAseq,
    BiocStyle,
    htmltools,
    sceasy,
    SeuratDisk,
    SeuratWrappers,
    zellkonverter,
    GEOfastq,
    cellxgene.census,
    dior,
    hdf5r,
    schard
VignetteBuilder: knitr
Additional_repositories: https://showteeth.github.io/drat/
URL: https://github.com/showteeth/GEfetch2R
BugReports: https://github.com/showteeth/GEfetch2R/issues
Depends:
    R (>= 2.10)