Commit 3e93ba5
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- .github/workflows/macos-builds.yml+30
- .github/workflows/ubuntu-builds.yml+34
- .github/workflows/ubuntu-distcheck.yml+5-7
- .gitmodules+3
- Makefile.am+6-4
- README.md+122-40
- configure.ac+13-6
- data/md5sum.txt+4-5
- docs/MANUAL.md+14-22
- docs/abismal.1+69-26
- docs/abismal.html+32-59
- src/AbismalAlign.hpp+173-177
- src/abismal.cpp+901-854
- src/abismal_cigar_utils.hpp+53
- src/bamxx+1
- src/smithlab_cpp+1-1
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