Adding autogen.sh for convenience

Author: andrewdavidsmith

autogen.sh

@@ -0,0 +1,47 @@
+#!/bin/sh
+#
+# Run 'autoreconf -i' to generate 'configure', 'Makefile.in', etc.,
+# including in the subdirectories of dnmtools src (for the git
+# submodules).
+#
+# The first time this is run on a new cloned git repo the configure
+# script will not be present, only the configure.ac and
+# Makefile.am. The rest must be generated by `autoreconf -i` and this
+# must happen in the `src/smithlab_cpp`,
+# `src/abismal/src/smithlab_cpp` and `src/abismal` subdirs. Running
+# `autoreconf -i` in some of these directories will move recursively
+# into others, but this is not guaranteed. This script will do each
+# separately.
+#
+# If you are working with a distribution (file ending with ".tar.gz"
+# or similar) then this script should not be needed, and should not be
+# present, as all the files should already exist. You should only run
+# this script if you know what you are doing with autoreconf.
+#
+# This script will only work with an argument to confirm the help
+# message has been read.
+
+runautoreconf() {
+    autoreconf -i src/abismal/src/smithlab_cpp;
+    autoreconf -i src/abismal;
+    autoreconf -i src/smithlab_cpp;
+    autoreconf -i;
+}
+
+if test -d .git && test "$(basename ${PWD})" == "dnmtools"
+then
+    runautoreconf
+    exit 0
+else
+    echo "  It seems you are either attempting to run this script       "
+    echo "  from the wrong directory, or in a source tree that was      "
+    echo "  not obtained by cloning the dnmtools git repo.              "
+    echo "                                                              "
+    echo "  ./autogen.sh generates the configure script in the          "
+    echo "  relevant subdirectories. Only run this if you know          "
+    echo "  what you are doing with autoreconf and are simply           "
+    echo "  avoiding doing that. If you just want to use the            "
+    echo "  software, download a release and this script will           "
+    echo "  not be needed.                                              "
+    exit 1
+fi