Adding configuration and md5sum for testing hypermr

Author: andrewdavidsmith

Makefile.am

@@ -56,11 +56,15 @@ EXTRA_DIST = \
              pipeline/config.yaml \
              pipeline/runconfig.yaml \
              pipeline/Snakefile \
+             data/md5sum.txt \
              data/tRex1.fa \
              data/tRex1_promoters.bed \
              data/reads_1.fq.gz \
              data/reads_2.fq.gz \
-             data/md5sum.txt \
+             data/radmeth_test_table.txt \
+             data/radmeth_test_design.txt \
+             data/two_epialleles.states \
+             data/araTha1_simulated.counts.gz \
              test_scripts/test_abismalidx.test \
              test_scripts/test_simreads.test \
              test_scripts/test_abismal.test \
@@ -75,7 +79,8 @@ EXTRA_DIST = \
              test_scripts/test_selectsites.test \
              test_scripts/test_radmeth.test \
              test_scripts/test_states.test \
-             test_scripts/test_amrfinder.test
+             test_scripts/test_amrfinder.test \
+             test_scripts/test_hypermr.test
 
 ### ADS: the file md5sum.txt can be regenerated by running the tests
 ### with "make check" and then doing `md5sum tests/* > md5sum.txt`
@@ -103,7 +108,8 @@ TESTS = test_scripts/test_simreads.test \
         test_scripts/test_selectsites.test \
         test_scripts/test_radmeth.test \
         test_scripts/test_states.test \
-        test_scripts/test_amrfinder.test
+        test_scripts/test_amrfinder.test \
+        test_scripts/test_hypermr.test
 
 TEST_EXTENSIONS = .test
 
@@ -227,4 +233,5 @@ CLEANFILES = \
     tests/reads.counts.select \
     tests/radmeth_test_output.txt \
     tests/reads.epiread \
-    tests/two_epialleles.amr
+    tests/two_epialleles.amr \
+    tests/araTha1_simulated.hypermr

configure.ac

@@ -79,6 +79,7 @@ tests/reads_2.fq.gz:data/reads_2.fq.gz
 tests/radmeth_test_table.txt:data/radmeth_test_table.txt
 tests/radmeth_test_design.txt:data/radmeth_test_design.txt
 tests/two_epialleles.states:data/two_epialleles.states
+tests/araTha1_simulated.counts.gz:data/araTha1_simulated.counts.gz
 ])
 
 AC_OUTPUT

data/md5sum.txt

@@ -17,3 +17,4 @@ b5270bb38d798741cfa74f411a0d49bf  tests/tRex1_promoters.roi.bed
 575f7daf8062c4aa3194370488794be8  tests/reads.bsrate
 5f6bd7100470c5306b41b6a56fe6690e  tests/reads.epiread
 e7e9590475a7f9b1ae41701d81892e57  tests/two_epialleles.amr
+ae05a28de5643a512386e767b3aa963a  tests/araTha1_simulated.hypermr