Adding a Dockerfile to make a docker container with all tools needed to run the pipeline for dnmtools analysis

Author: andrewdavidsmith

pipeline/Dockerfile

@@ -0,0 +1,16 @@
+# syntax=docker/dockerfile:1
+
+## Copy this file to where the directory where you have the dnmtools
+   binary. Make sure it was built on linux x86_64.
+
+FROM ubuntu:22.04
+
+# install pipeline dependencies
+RUN apt-get update
+RUN apt-get install -y libgsl-dev libhts-dev libgomp1 samtools libcurl4 trim-galore sra-toolkit rsync
+RUN rm -rf /var/lib/apt/lists/*
+RUN rsync -a hgdownload.soe.ucsc.edu::genome/admin/exe/linux.x86_64/bedToBigBed /usr/bin
+RUN rsync -a hgdownload.soe.ucsc.edu::genome/admin/exe/linux.x86_64/wigToBigWig /usr/bin
+
+# install dnmtools and it must be build for Ubuntu
+COPY dnmtools /usr/bin