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README.md

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@@ -5,13 +5,13 @@ to examine the utility of further sequencing, optimize the sequencing
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depth, or to screen multiple libraries to avoid low complexity
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samples.
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SYSTEM REQUIREMENTS:
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SYSTEM REQUIREMENTS
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========================================================================
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The preseq software will only run on 64-bit UNIX-like operating
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systems and was developed on both Linux and Mac. The preseq software
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requires a C++ compiler that supports C++11.
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INSTALLATION:
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INSTALLATION
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========================================================================
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### Installing from a release
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The HTSLib library can be obtained here:
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http://www.htslib.org/download.
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INPUT FILE FORMATS:
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INPUT FILE FORMATS
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========================================================================
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The input to preseq can be in 3 general formats:
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1. Mapped read locations in BED or BAM file format. The file should be
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line. These will be made into the "counts histogram" inside preseq
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right away.
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USAGE EXAMPLES:
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USAGE EXAMPLES
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========================================================================
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Each program included in this software package will print a list of
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options if executed without any command line arguments. Many of the

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