dataflow_transfer/dataflow_transfer/run_classes/illumina_runs.py at ea81a1ad50b6e85cdad2d838dae65262e0d3624d · ssjunnebo/dataflow_transfer · GitHub

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from dataflow_transfer.run_classes.generic_runs import Run

from .registry import register_run_class


class IlluminaRun(Run):
    """Defines an Illumina sequencing run"""

    run_family = "Illumina"

    def __init__(self, run_dir, configuration):
        super().__init__(run_dir, configuration)
        self.final_file = "CopyComplete.txt"


@register_run_class
class NovaSeqXPlusRun(IlluminaRun):
    """Defines a NovaSeq X Plus sequencing run"""

    run_type = "NovaSeqXPlus"

    def __init__(self, run_dir, configuration):
        super().__init__(run_dir, configuration)


@register_run_class
class NextSeqRun(IlluminaRun):
    """Defines a NextSeq sequencing run"""

    run_type = "NextSeq"

    def __init__(self, run_dir, configuration):
        super().__init__(run_dir, configuration)


@register_run_class
class MiSeqRun(IlluminaRun):
    """Defines a MiSeq sequencing run"""

    run_type = "MiSeq"

    def __init__(self, run_dir, configuration):
        super().__init__(run_dir, configuration)


@register_run_class
class MiSeqi100Run(IlluminaRun):
    """Defines a MiSeqi100 sequencing run"""

    run_type = "MiSeqi100"

    def __init__(self, run_dir, configuration):
        super().__init__(run_dir, configuration)