I'm trying to set up an python environment in conda that runs GPTime. Can you specify the version of the required packages?
This is my environment so far, but it fails:
(GPTime) D:\Benni\Code\GPTime>conda list
# packages in environment at D:\Programs\anaconda3\envs\GPTime:
#
# Name Version Build Channel
backports 1.0 py27_1
backports.functools_lru_cache 1.5 py27_1
backports_abc 0.5 py27h0ec6b72_0
blas 1.0 mkl
ca-certificates 2018.03.07 0
certifi 2018.10.15 py27_0
cycler 0.10.0 py27h59acbbf_0
decorator 4.3.0 <pip>
freetype 2.9.1 h4d385ea_1
functools32 3.2.3.2 py27_1
futures 3.2.0 py27_0
GPy 1.9.6 <pip>
icc_rt 2017.0.4 h97af966_0
icu 58.2 h2aa20d9_1
intel-openmp 2019.0 118
joblib 0.12.5 py27_0
jpeg 8d vc9_2
kiwisolver 1.0.1 py27hc56fc5f_0
libpng 1.6.35 h7a46e7a_0
libtiff 4.0.6 vc9_2
matplotlib 1.5.1 np111py27_0
mkl 2019.0 118
mkl_fft 1.0.6 py27hac4a418_0
numpy 1.11.3 py27hfef472a_4
numpy-base 1.15.4 py27h2753ae9_0
openssl 1.1.1 h0c8e037_0
paramz 0.9.4 <pip>
pip 18.1 py27_0
pyparsing 2.3.0 py27_0
pyqt 4.10.4 py27_1
python 2.7.15 h2880e7c_3
python-dateutil 2.7.5 py27_0
pytz 2018.7 py27_0
qt 4.8.7 vc9_6
scikit-learn 0.19.2 py27hc804a74_0
scipy 1.1.0 py27ha5da055_0
setuptools 40.5.0 py27_0
singledispatch 3.4.0.3 py27h3f9d112_0
sip 4.18.1 py27hc56fc5f_2
six 1.11.0 <pip>
six 1.11.0 py27_1
sqlite 3.25.2 h0c8e037_0
tk 8.5.18 vc9_0
tornado 5.1.1 py27h0c8e037_0
vc 9 h7299396_1
vs2008_runtime 9.00.30729.1 hfaea7d5_1
wheel 0.32.2 py27_0
wincertstore 0.2 py27hf04cefb_0
zlib 1.2.11 hbc2faf4_2
(GPTime) D:\Benni\Code\GPTime>python gptime.py --operation train --peptides ./Da
ta/20110922_EXQ4_NaNa_SA_YeastEasy_Labelfree_06.rtimes_q_0.001.tsv --model ./mod
el.pk --ntrain 100
D:\Programs\anaconda3\envs\GPTime\lib\site-packages\sklearn\cross_validation.py
:41: DeprecationWarning:This module was deprecated in version 0.18 in favor of t
he model_selection module into which all the refactored classes and functions ar
e moved. Also note that the interface of the new CV iterators are different from
that of this module. This module will be removed in 0.20.
D:\Programs\anaconda3\envs\GPTime\lib\site-packages\sklearn\grid_search.py:42:
DeprecationWarning:This module was deprecated in version 0.18 in favor of the mo
del_selection module into which all the refactored classes and functions are mov
ed. This module will be removed in 0.20.
D:\Programs\anaconda3\envs\GPTime\lib\site-packages\GPy\kern\src\stationary.py:
168: RuntimeWarning:overflow encountered in divide
D:\Programs\anaconda3\envs\GPTime\lib\site-packages\GPy\kern\src\rbf.py:54: Run
timeWarning:invalid value encountered in multiply
(GPTime) D:\Benni\Code\GPTime>
I'm trying to set up an python environment in conda that runs GPTime. Can you specify the version of the required packages?
This is my environment so far, but it fails: