Update pkg infra

Author: pratikunterwegs

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: vimcheck
 Title: Diagnostics for Vaccine Impact Modelling Consortium Burden and
     Impact Estimates
-Version: 0.0.1
+Version: 0.0.3
 Authors@R: c(
     person("Pratik", "Gupte", , "p.gupte24@imperial.ac.uk", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5294-7819")),
@@ -38,6 +38,7 @@ Suggests:
     spelling,
     testthat (>= 3.0.0),
     tibble,
+    vdiffr,
     withr
 VignetteBuilder: 
     knitr

NAMESPACE

@@ -10,10 +10,30 @@ export(plot_coverage_set)
 export(plot_fvp)
 export(plot_global_burden)
 export(plot_global_burden_decades)
+export(prep_plot_age)
+export(prep_plot_burden_decades)
+export(prep_plot_coverage_set)
+export(prep_plot_demography)
+export(prep_plot_fvp)
+export(prep_plot_global_burden)
 export(theme_vimc)
+export(theme_vimc_noxaxis)
 export(transform_coverage_fvps)
 export(validate_complete_incoming_files)
 export(validate_file_dict_template)
 export(validate_template_alignment)
 importFrom(dplyr,.data)
+importFrom(ggplot2,'%+replace%')
+importFrom(ggplot2,aes)
+importFrom(ggplot2,facet_grid)
+importFrom(ggplot2,facet_wrap)
+importFrom(ggplot2,geom_col)
+importFrom(ggplot2,geom_hline)
 importFrom(ggplot2,ggplot)
+importFrom(ggplot2,label_wrap_gen)
+importFrom(ggplot2,labeller)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,scale_fill_distiller)
+importFrom(ggplot2,scale_x_continuous)
+importFrom(ggplot2,scale_y_continuous)
+importFrom(ggplot2,vars)

NEWS.md

@@ -1,3 +1,15 @@
+# vimcheck 0.0.3
+
+- Separated data-prep for plotting from plotting functions.
+
+- Added tests for plotting preparation and plotting functions.
+
+# vimcheck 0.0.2
+
+- Added initial data validation functions and some tests.
+
+- Added VIMC _ggplot2_ theme.
+
 # vimcheck 0.0.1
 
 - Added GHA workflows to notify of changed dependencies, auto-render `README.md` from `README.Rmd`, and update the copyright year annually.

_pkgdown.yml

@@ -1,6 +1,5 @@
 # NOTE: Update the `url` field as needed
-# e.g. "https://vimc.github.io/vimpact/"
-url: ~
+url: "https://vimc.github.io/vimcheck/"
 template:
   bootstrap: 5
 
@@ -12,6 +11,10 @@ reference:
     desc: Package diagnostic functions.
     contents:
     - has_keyword("diagnostics")
+  - title: Plotting prepartion
+    desc: Prepare validated data for plotting.
+    contents:
+    - plotting_prep
   - title: Plotting functions
     desc: Package plotting functions.
     contents: