Skip to content

Commit 629888a

Browse files
jcschaffclaude
andcommitted
Upgrade COPASI/basico and modernize vcell-opt Docker image
- Upgrade copasi-basico 0.40 → 0.86, python-copasi 4.37.264 → 4.46.300 - Set minimum Python to 3.10 (matches Dockerfile and COPASI wheel availability) - Fix report format: use separator='\t' parameter instead of inline '\\\t' body items, which new basico writes as literal backslashes - Upgrade Dockerfile base from bullseye (EOL) to bookworm (Debian 12) - Add gcc and python3-dev to Dockerfile for psutil compilation - Fix deprecated poetry.dev-dependencies → poetry.group.dev.dependencies - Regenerate poetry.lock Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
1 parent fd99ebb commit 629888a

5 files changed

Lines changed: 417 additions & 98 deletions

File tree

pythonCopasiOpt/Dockerfile

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
1-
FROM python:3.10-slim-bullseye
1+
FROM python:3.10-slim-bookworm
22

33
RUN apt -y update && apt -y upgrade && \
4-
apt install -y curl
4+
apt install -y curl gcc python3-dev && \
5+
rm -rf /var/lib/apt/lists/*
56

67
RUN mkdir -p /usr/local/app/vcell/installDir && \
78
mkdir -p /usr/local/app/vcell/installDir/python/vcell_opt

0 commit comments

Comments
 (0)