Commit 629888a
Upgrade COPASI/basico and modernize vcell-opt Docker image
- Upgrade copasi-basico 0.40 → 0.86, python-copasi 4.37.264 → 4.46.300
- Set minimum Python to 3.10 (matches Dockerfile and COPASI wheel availability)
- Fix report format: use separator='\t' parameter instead of inline '\\\t'
body items, which new basico writes as literal backslashes
- Upgrade Dockerfile base from bullseye (EOL) to bookworm (Debian 12)
- Add gcc and python3-dev to Dockerfile for psutil compilation
- Fix deprecated poetry.dev-dependencies → poetry.group.dev.dependencies
- Regenerate poetry.lock
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>1 parent fd99ebb commit 629888a
5 files changed
Lines changed: 417 additions & 98 deletions
File tree
- pythonCopasiOpt
- vcell-opt
- tests
- vcell_opt
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