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Merge branch 'master' into vf-react-chatbot
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{
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"predefinedQA": {
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"What is Metabolights?": {
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"answer": "<div>MetaboLights is an open access repository for metabolomics studies, including raw experimental data and associated metadata.</div>\n<div>To know more:</div>\n<ol>\n <li class='vf-list__item'>\n <a href='#'>Methods and resources for omics studies</a>: A curated collection of EMBL-EBI on-demand training.\n </li>\n <li class='vf-list__item'>\n <a href='#'>MetaboLights</a>: Quick tour.\n </li>\n <li class='vf-list__item'>\n <a href='#'>Chemical biology</a>: A curated set of EMBL-EBI online courses.\n </li>\n</ol>"
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},
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"Learn how to apply bioinformatics tools in your academic work": {
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"answer": "Our Tools and Services portal provides access to commonly used resources in genomics, proteomics, and more. We also offer tutorials and use cases to guide integration into your academic projects."
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},
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"Start a guided learning path in bioinformatics": {
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"answer": "Great! You can begin with our structured courses and learning paths designed for beginners at the EMBL-EBI Training Portal. Perfect for students and early-stage researchers.",
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"sources": [
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{
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"domain": "ebi.ac.uk",
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"title": "EMBL-EBI Training",
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"url": "https://www.ebi.ac.uk/training/",
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"description": "Delivering world-class training in data-driven life sciences."
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}
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]
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},
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"Find resources and tools for structural biology analysis": {
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"answer": "Discover tools for structural biology, including protein modeling, domain analysis, and sequence alignment. Visit our Tools & Services portal to access popular resources.",
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"sources": [
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{
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"domain": "github.com",
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"title": "Structural Biology",
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"url": "https://github.com/pengzhangzhi/Awesome-Computational-Structural-Biology?utm_source=chatgpt.com",
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"description": "Awesome Computational Structural Biology (GitHub) – curated list of tools, tutorials, and courses"
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},
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{
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"domain": "hwi.buffalo.edu",
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"title": "Structural Biology Resource Page",
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"url": "https://hwi.buffalo.edu/structural-biology-resources/?utm_source=chatgpt.com",
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"description": "Structural Biology Resource Page – links to cryo-EM, crystallography, and X-ray data collection info from Hauptman-Woodward Institute"
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},
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{
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"domain": "www.creative-biostructure.com",
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"title": "Structural Biology Tools",
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"url": "https://www.creative-biostructure.com/structural-biology-tools.htm?srsltid=AfmBOooqvJ0ksY6p6Pryq1diKVWPxNK0t68zKnuyMuTB0_k1IABozOXO&utm_source=chatgpt.com",
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"description": "Creative Biostructure – lists structural resources and software across core techniques like crystallography and cryo-EM"
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}
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]
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},
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"How can I submit genomic data to EMBL-EBI?": {
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"answer": "To submit genomic data, visit the EMBL-EBI submission portal, where you’ll find step-by-step guides and tools for submitting sequencing data, assemblies, annotations, and more.",
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"sources": [
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{
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"domain": "ebi.ac.uk",
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"title": "EMBL's European Bioinformatics Institute",
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"url": "https://www.ebi.ac.uk/",
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"description": "Run BLAST searches against comprehensive sequence databases at EMBL-EBI."
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},
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{
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"domain": "ena-docs.readthedocs.io",
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"title": "ENA Documentation",
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"url": "https://ena-docs.readthedocs.io/en/latest/",
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"description": "ENA Documentation"
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}
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]
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},
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"Access documentation and developer tools": {
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"answer": "Explore the databse, where you can find model predictions, usage documentation, API access, and links to related publications. Developers can also access integration guides through the EMBL-EBI API Hub.",
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"sources": [
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{
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"domain": "ebi.ac.uk",
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"title": "EMBL-EBI APIs and Tools",
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"url": "https://www.ebi.ac.uk/services",
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"description": "Browse services by domain (genomics, proteomics, etc.) and access APIs."
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},
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{
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"domain": "ebi.ac.uk",
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"title": "EMBL-EBI API Documentation",
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"url": "https://www.ebi.ac.uk/about/api",
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"description": "RESTful APIs for tools like BLAST, InterProScan, Clustal Omega, etc."
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}
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]
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},
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"Discover upcoming bioinformatics workshops for beginners": {
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"answer": "Start your learning journey with our Training Events Calendar, featuring upcoming live webinars, virtual workshops, and in-person courses. Many sessions are designed for beginners and cover topics like genomics, data standards, and tool usage."
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}
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},
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"fallbackResponses": [
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{
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"answer": "I'm sorry, I'm having trouble connecting to my knowledge base right now. Could you try again in a moment?",
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"prompts": [
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{
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"action_text": "Contact support team",
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"action_url": "tel:+44 1223 494 444"
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},
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{
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"action_text": "Submit a support request",
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"action_url": "https://www.ebi.ac.uk/about/contact/support/"
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}
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]
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}
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]
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}
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{
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"routes": [
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{
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"id": "gpt4-turbo",
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"title": "GPT-4 Turbo",
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"description": "Advanced language model with broader context window and improved capabilities",
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"selected": true
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},
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{
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"id": "claude3-opus",
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"title": "Claude 3 Opus",
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"description": "Anthropic's most powerful model with enhanced reasoning and analysis capabilities"
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},
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{
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"id": "gemini-ultra",
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"title": "Gemini Ultra",
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"description": "Google's most capable model for complex tasks and multitask reasoning"
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},
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{
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"id": "llama3",
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"title": "LLaMA 3",
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"description": "Meta's open foundation model with strong performance across various tasks"
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},
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{
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"id": "mixtral",
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"title": "Mixtral 8x7B",
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"description": "Mistral AI's mixture-of-experts model combining multiple specialized networks"
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},
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{
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"id": "palm3",
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"title": "PaLM 3",
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"description": "Google's latest PaLM model optimized for reasoning and multilingual tasks"
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},
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{
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"id": "gpt4-vision",
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"title": "GPT-4 Vision",
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"description": "Specialized version of GPT-4 for multimodal tasks including image understanding"
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},
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{
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"id": "claude3-sonnet",
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"title": "Claude 3 Sonnet",
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"description": "Balanced model offering strong performance with improved efficiency"
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}
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]
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}
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{
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"routes": [
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{
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"id": "ensembl",
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"title": "Ensembl"
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},
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{
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"id": "uniprot",
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"title": "UniProt"
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},
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{
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"id": "pfam",
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"title": "Pfam"
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},
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{
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"id": "interpro",
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"title": "InterPro"
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},
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{
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"id": "chembl",
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"title": "ChEMBL"
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},
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{
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"id": "pdbe",
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"title": "PDBe"
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},
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{
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"id": "expression-atlas",
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"title": "Expression Atlas"
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},
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{
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"id": "pride",
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"title": "PRIDE"
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},
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{
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"id": "arrayexpress",
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"title": "ArrayExpress"
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},
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{
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"id": "intact",
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"title": "IntAct"
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},
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{
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"id": "reactome",
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"title": "Reactome"
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},
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{
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"id": "metabolights",
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"title": "MetaboLights"
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}
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]
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}

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