main - upd error message

vmikk · vmikk · commit de1c9d77913a · 2025-12-10T15:49:36.000+02:00
diff --git a/main.nf b/main.nf
@@ -123,7 +123,7 @@ if( params.step == "Step1" ) {
   }
 
   if (params.hp == true && params.seqplatform == "Illumina" && params.illumina_keep_notmerged == true) {
-      println( errorMsg("Homopolymer compression is not implemented for Illumina non-merged reads.", params.monochrome_logs))
+      println( errorMsg("Homopolymer compression is not implemented for Illumina non-merged reads (add `--hp false` to your command).", params.monochrome_logs))
       exit(1)
   }
   if (params.seqplatform == "Illumina" && params.demultiplexed == true) {

Original file line number	Diff line number	Diff line change
`@@ -123,7 +123,7 @@ if( params.step == "Step1" ) {`
`123`	`123`	`}`
`124`	`124`
`125`	`125`	`if (params.hp == true && params.seqplatform == "Illumina" && params.illumina_keep_notmerged == true) {`
`126`		`- println( errorMsg("Homopolymer compression is not implemented for Illumina non-merged reads.", params.monochrome_logs))`
	`126`	+ println( errorMsg("Homopolymer compression is not implemented for Illumina non-merged reads (add `--hp false` to your command).", params.monochrome_logs))
`127`	`127`	`exit(1)`
`128`	`128`	`}`
`129`	`129`	`if (params.seqplatform == "Illumina" && params.demultiplexed == true) {`